Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., MATE family efflux transporter from Rhodopseudomonas palustris CGA009

 Score =  198 bits (503), Expect = 4e-55
 Identities = 126/448 (28%), Positives = 213/448 (47%), Gaps = 9/448 (2%)

Query: 4   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVG 63
           ++ E    + LA P+ +  + Q  M   D  + G +    +AA ++A  +   +   G+G
Sbjct: 25  WRTELIETLWLAWPMALTQLGQIAMMTTDLALIGRLGDAAVAAAALAHFVLFSTFTMGLG 84

Query: 64  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 123
           L+ A+ P+ AQ  GA    ++   +  GL   ++  VP+       + ++  +    A +
Sbjct: 85  LVSAVTPLAAQAFGARAPRQVRASLRVGLWAGVIAGVPLTLGQLYGEELLVALGQNPATS 144

Query: 124 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 183
                Y+  + +++    LF ALR     ++  +PA+ I    + +N+ L ++ ++G FG
Sbjct: 145 RLAGDYLDGLAWSLVPGWLFIALRGLMGAVNRPEPALWIMLTAIPINLGLAYVLIHGSFG 204

Query: 184 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 243
            P L   G G+AT+IV W M +      VT +     +VF    +   + + RL +LG P
Sbjct: 205 LPRLEIFGAGLATSIVSWAMCIAAAVVCVTMRPFRKYQVFGELFRFDGELMRRLLQLGLP 264

Query: 244 VAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 303
           ++ A   E  +F   ALL+   G+T +AAHQ+AL  ++++FM PM I  A ++RVGH +G
Sbjct: 265 ISGASVLEYGVFGAAALLMGKFGTTALAAHQIALQVAAIMFMVPMGISVAATVRVGHAVG 324

Query: 304 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLY---TENQVVVA-LAMQLLLF 359
             D   A  A    +  G        LL  L R QI  L+   ++  +  A L   LL+ 
Sbjct: 325 RGDPPSARRAGFAAIGLGFVFMAAMTLLVALTRHQIPQLFLGDSDTSIETATLTAALLIV 384

Query: 360 AAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 419
            A +   D +QVVA G+LRG  D         + +WV+G P  ++LG         LG  
Sbjct: 385 GASFFIADGLQVVANGALRGRNDTKVPLLFAVLGFWVIGFPFCWVLGF-----HTDLGPF 439

Query: 420 GFWLGFIIGLSAAALMLGQRLYWLQKQS 447
           G W+G  +GL   A +L  R + L + +
Sbjct: 440 GVWIGLAVGLVVYAALLVWRFHRLTRDA 467