Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  441 bits (1134), Expect = e-128
 Identities = 223/452 (49%), Positives = 307/452 (67%), Gaps = 1/452 (0%)

Query: 1   MHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILF 60
           M+++  +A  L+ LA PVLIA V QT MGF+DT+MAG VSA+DMAAV+I  S+WLP++LF
Sbjct: 1   MNQFGFQAKKLVHLALPVLIAQVTQTMMGFIDTVMAGRVSALDMAAVAIGGSLWLPALLF 60

Query: 61  GVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEE 120
             GLL+A  PV A  +GA  Q+ I     Q   +A++ +  +I++L     I + MD+  
Sbjct: 61  VQGLLVAFTPVFASHHGADNQNAIRPMAFQAAYIAIIGAAVVISILLFAPQIFKLMDLSP 120

Query: 121 AMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYG 180
            +A  +V Y+H   + VPA++L+Q LR  ++G+S T P MVIGF+GL +NIP N+IF+YG
Sbjct: 121 ELAELSVSYLHGFAWGVPAFVLYQVLRGCSEGISYTLPTMVIGFVGLAVNIPANYIFIYG 180

Query: 181 KFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 240
             GAP LGG GCG+ATA+V+W M + +  Y+   KR A +K    FH P  K + R+ + 
Sbjct: 181 HLGAPALGGAGCGIATALVFWAMFIAMTIYMQWHKRFAVIKPLGAFHLPDLKTMKRMTKH 240

Query: 241 GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 300
           G P+A ALFFEV+LFA++ALL+APLG+ VVA HQ+ALNFSS+VFM P+SIG AVSIRVG+
Sbjct: 241 GMPIAMALFFEVSLFAIIALLLAPLGADVVAGHQIALNFSSIVFMLPLSIGIAVSIRVGY 300

Query: 301 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 360
            LG+     A +   VGL    + A  TA++TV+FR QIALLY +N  VVALA  L+  A
Sbjct: 301 YLGQYKADVAKLVTKVGLAIAFSLAACTAVITVVFRTQIALLYNQNPEVVALASSLMFLA 360

Query: 361 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 420
           A+YQ  D+VQVV AG+LRGY D  + F+ T +SYW +G+  GY+L  T+ L    +GA G
Sbjct: 361 ALYQLSDSVQVVTAGALRGYHDTRSAFYITLVSYWAIGMVLGYLLAETDILV-PAMGAHG 419

Query: 421 FWLGFIIGLSAAALMLGQRLYWLQKQSDDVQL 452
           FW+G I GL++AAL+   RL ++QK    + L
Sbjct: 420 FWIGLIAGLTSAALLFALRLQYIQKHPKQLAL 451