Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score = 74.3 bits (181), Expect = 8e-18
 Identities = 100/440 (22%), Positives = 180/440 (40%), Gaps = 52/440 (11%)

Query: 11  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVP 70
           L+ ++ P LI  +   G   VDT     +    +AA+S    + L      +G+   +  
Sbjct: 16  LLNMSLPNLIGILTILGFSLVDTFFISQLGTEALAAISFTFPVTLIVSSIAIGIGAGVST 75

Query: 71  VVAQLNGAGRQHKIPFEVHQGLILA--LLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVG 128
            + +L G+G   K    +H  L++   L+ ++ ++  LF    +   +   +        
Sbjct: 76  NLGRLIGSGNSPKAKVFLHDALLITFWLIAALSLLGSLFIGP-LFTLLGANDDSLPLIRD 134

Query: 129 YMHAVIFAVPAYLLF----QALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 184
           YM       P  +L     Q LR+  D    TK    I  +  ++N+ L+ + ++G    
Sbjct: 135 YMFLWYLGAPLLVLLMVGNQGLRATGD----TKSPAKIMALAAVINLVLDPLLIFGLGPF 190

Query: 185 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKR-----------LAHVKVFETFHKPQPKE 233
           P L   G  +AT ++ W++ L L  Y++  KR             H    +  H  QP  
Sbjct: 191 PRLEIQGAAIAT-LISWVVALSLSGYLLIIKRNLVDFAEFNLERIHCNWRQLAHIAQPAA 249

Query: 234 LIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAA 293
           L+ L     PVA          A++  ++A +  + VAA        S++ +  M++ ++
Sbjct: 250 LMNLLN---PVAN---------AIIMAMLARIDHSAVAAFGAGTRLESVLLIAVMALSSS 297

Query: 294 VSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTEN-QVVVAL 352
           +   +   LG   T+ A  A  + L   L    +  L   L    IA L++++ QV+  L
Sbjct: 298 LVPFIAQNLGAGQTERARDALMLSLRFVLVFQTLIYLPLALMATPIAQLFSKDPQVIEWL 357

Query: 353 AMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLT 412
           +  ++   A Y  +  V ++ A SL  Y       HR  +S  VL +   ++L +     
Sbjct: 358 SFYIIALPAAYGPLGMV-ILTATSLNAY-------HRP-MSSLVLNVCRLFLLLL----- 403

Query: 413 EQPLGAKGFWLGFIIGLSAA 432
             PL A G +LG + GL  A
Sbjct: 404 --PLAALGSYLGGVKGLLLA 421