Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  441 bits (1135), Expect = e-128
 Identities = 222/439 (50%), Positives = 306/439 (69%), Gaps = 1/439 (0%)

Query: 7   EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLM 66
           +A  LI+LA PVLIA V QT MGF+DT+MAG VSA+DMAAV++  S+WLP+ILF  GLLM
Sbjct: 7   QAKRLIQLALPVLIAQVTQTMMGFIDTVMAGRVSAVDMAAVAVGTSLWLPAILFVQGLLM 66

Query: 67  ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 126
           A  P+ A  NGA  Q  I     QG  LAL+  + ++  L     ++  M++E  +   T
Sbjct: 67  AFTPLFAHHNGANNQKAIQPLAFQGAYLALIGGLGVMVFLASAPLVLSHMNLEPQLYNLT 126

Query: 127 VGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE 186
           +GY+  +++  PA++L+Q LR  ++G+S T P MVIGF+GL +NIP N+IF+YG FG P 
Sbjct: 127 IGYIDGILWGAPAFVLYQVLRGCSEGISYTLPTMVIGFVGLAVNIPANYIFIYGHFGIPA 186

Query: 187 LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAA 246
           +GG GCG+ATA+V+W ML+ +  Y+   K+ A +  F  FH+P    + ++ +LG P+A 
Sbjct: 187 MGGAGCGIATALVFWAMLIAMAIYMQFHKKFAALAPFSQFHRPDFATMKKMTKLGLPIAM 246

Query: 247 ALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQD 306
           ALFFEV+LFA++ALL+APLG+TVVA+HQ+ALNFS++VFM P+SIG AVSIR+G+ LG   
Sbjct: 247 ALFFEVSLFAIIALLLAPLGATVVASHQIALNFSAIVFMLPLSIGIAVSIRIGYYLGRDR 306

Query: 307 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCM 366
              +A+ A VGL+  L+ A  TA+LTVLFR QIA LY  +  VV LA  L+L AA+YQ  
Sbjct: 307 ADISAVVAKVGLLLALSLALSTAILTVLFRFQIAELYNSDPEVVVLAGSLMLMAALYQLS 366

Query: 367 DAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFI 426
           D+VQVVAAG+LRGYKD  + F+ T  SYW +G+  GY L  T+++    +GA GFW G I
Sbjct: 367 DSVQVVAAGALRGYKDTRSAFYITLFSYWGIGMSLGYTLAYTDFIV-PAMGAHGFWTGLI 425

Query: 427 IGLSAAALMLGQRLYWLQK 445
            GL++AAL+   RL ++QK
Sbjct: 426 AGLTSAALLFFIRLRYIQK 444