Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.1 bits (222), Expect = 1e-22
 Identities = 84/412 (20%), Positives = 168/412 (40%), Gaps = 22/412 (5%)

Query: 6   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLL 65
           ++   +I L  P+ I ++ Q+ +G  D  M    S   +AAV +   +    ++  + + 
Sbjct: 9   QQRMGIIALTWPIFIETLLQSLLGISDIFMLSHYSDNAVAAVGLTTQLMFFMMVMSMMVS 68

Query: 66  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPI-IAVLFQTQFIIRFMDVEEAMAT 124
                +++Q NGAGR  +        + L+L ++V +  A+ F    II   ++E  +A 
Sbjct: 69  TGASILISQNNGAGRTQEATDIGVASVALSLGLAVVMGAAMFFCAHGIIGLFELEPKVAG 128

Query: 125 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 184
               Y+          ++  A  +       T+ AM++     L+N+  N+I +Y  FG 
Sbjct: 129 YGYDYLLICGSLSIGLVMNIAFAAILRSYGFTRSAMLVTLSTGLMNVLGNYIALYSPFGL 188

Query: 185 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR-------- 236
           P  G  G  ++T +   +M  L++  ++ SK           H P P + +         
Sbjct: 189 PVYGVTGVAIST-VTSQLMGALIMLAVIRSK-----------HIPLPMQRLNSLPRSTYW 236

Query: 237 -LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVS 295
            + R+G   A  +         +   ++ +G+  + A+   LN S  ++ F +++G A  
Sbjct: 237 SVMRIGLLNAGEMLSYNVAQMTIIYFISQMGTLSLTAYTYGLNISRFIYCFSVALGQAAQ 296

Query: 296 IRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQ 355
           I+ G+ +G+Q      +      + G   +    L+    R  I    +EN  V+ L   
Sbjct: 297 IQTGYYVGKQWFDEITVRVQKYCLVGFIVSLAIVLIFFWQRFTIVGWLSENPEVIQLTAL 356

Query: 356 LLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGM 407
           LLL +   +      +V   +L+G  D+         S W +G+   +  G+
Sbjct: 357 LLLGSIALETGRVFNLVIISALKGAGDVAFTVRVGLFSMWGIGVLLAWFFGL 408