Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., MATE efflux family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  181 bits (459), Expect = 4e-50
 Identities = 117/442 (26%), Positives = 217/442 (49%), Gaps = 17/442 (3%)

Query: 8   ASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSI-AASIWLPSILFGVGLLM 66
           A  ++KL  P++ + +AQ  +   DT+M G  SA  +AAV + ++SI+   ++ G G   
Sbjct: 11  ARAILKLGLPLIGSHMAQIAISATDTVMLGWYSAEALAAVVLGSSSIFFALLIVGSGFAW 70

Query: 67  ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 126
           A++P+VA+    G + +I      G  L L+ +  +   +  +   +  +  +   A  T
Sbjct: 71  AVMPMVAKAASEGDEVQIRRVTRMGFWLVLIFAAVVTPPMLWSAPWLVALGQDPGTAQLT 130

Query: 127 VGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE 186
             Y+     A+   LL   L+ +   +  T+  + +     +LN  LN++ ++G+ G PE
Sbjct: 131 QEYLRIAGLALGPGLLVMVLKGYLSALERTQVVLWVTIGAAVLNAGLNYVLIFGRLGMPE 190

Query: 187 LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAA 246
           LG  G  +A+  ++ + L+ L+ Y    ++L    +F     P       ++RLG+P++ 
Sbjct: 191 LGIRGAALASLSLHLVSLVALVIY--ARRKLPEHDLFRRLWVPDWSAFRAVYRLGWPISV 248

Query: 247 ALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQD 306
             F E  +FA  A+++  +G+  +AAH +AL   ++ FM  + +  A ++R G  LG  D
Sbjct: 249 TSFAESGMFAASAMMMGAIGTLHLAAHGIALQMVAITFMVHVGLSQAATVRAGRALGLGD 308

Query: 307 T----KGAAIAANVGLMTGLATACITALLT---VLFREQIALLYTENQVVVALAMQLLLF 359
                +G A+A  + L  G +   +   +T   VL    ++        ++ + + LL  
Sbjct: 309 AAALKRGGAVA--IALSAGFSLCTVVVFVTMPEVLIGAFLSPDEPARAEILGIGIALLFM 366

Query: 360 AAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 419
           AA++Q  D  Q++A G LRG +D         ++YW +GLP G++LG        PL   
Sbjct: 367 AALFQFADGAQIMALGLLRGVQDTRVPMVIAALAYWGVGLPVGFVLGFYT-----PLAGV 421

Query: 420 GFWLGFIIGLSAAALMLGQRLY 441
           G W G ++GL+ AA++L  R +
Sbjct: 422 GIWAGLVVGLALAAMLLMWRFW 443