Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Na+ driven multidrug efflux pump from Caulobacter crescentus NA1000

 Score =  159 bits (403), Expect = 1e-43
 Identities = 124/447 (27%), Positives = 214/447 (47%), Gaps = 22/447 (4%)

Query: 11  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILF---GVGLLMA 67
           L++LA PV+++ +    MG  D I+ G  SA  +   ++A   W PS +F    VGLL+ 
Sbjct: 32  LLRLAGPVVLSRLGIMVMGLTDAIVVGHFSAQQLGYHAMA---WAPSSVFVTATVGLLVG 88

Query: 68  LVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVL--FQTQFIIRFMDVEEAMATK 125
           +  + A+  GAG  H+    + +GL+ A  +    +A+L  F   F+ + M +++ +A  
Sbjct: 89  VQVMTARAMGAGNPHETGAVLRRGLVYAGWLGFGSMALLALFGPMFL-QAMGLKDGLAEG 147

Query: 126 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 185
               +     ++P Y +   L  + +G+S   P   + ++  ++N+  N + V G  G P
Sbjct: 148 ATLPLIVFSLSLPVYAISVVLTFWLEGLSRPGPGAAMMWLANVVNLGANLLLVPGVLGPP 207

Query: 186 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 245
            LG VG   AT I    + L L  +++  K    + VF+   + +P E I   R+G+   
Sbjct: 208 ALGAVGGAWATFIARTALALALAIFVIRMKEARELGVFDKPARDRPAE-IEQRRIGYGAG 266

Query: 246 AALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQ 305
           A+ FFEV+ FA + L+   + +  VAA+ V LN S+++FM P+ + +A ++ VG   G +
Sbjct: 267 ASNFFEVSAFAGMNLICGWISAVAVAAYTVVLNVSAIIFMVPLGVASATAVMVGRAYGAR 326

Query: 306 DTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQC 365
           D  G   A  +          +  LL    +  +AL YT +   +AL +  L+ A ++  
Sbjct: 327 DPAGMTRAGWIAFAVIGVIGVLFGLLLYPTKHWVALAYTTDPAALALILPALVLACLFFA 386

Query: 366 MDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQP--LGAKGFWL 423
            DAVQVVAA +LR   ++        ISY         ++G   W    P  +G  G  +
Sbjct: 387 PDAVQVVAAQALRARGEVWVPTITHLISY-------ALVMGPLAWWLAIPKGMGLNGVLV 439

Query: 424 GFIIGLSAAA---LMLGQRLYWLQKQS 447
             I+    AA   LM  + L W  +++
Sbjct: 440 SIIVTSFLAAGFLLMRFRMLDWRDRKA 466