Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., BexA, putative cation effux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 76/346 (21%), Positives = 155/346 (44%), Gaps = 24/346 (6%)

Query: 17  PVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLN 76
           PV+++ + +  +   D +  G V  I++ A ++A   +L   + G G  + L  ++A+ N
Sbjct: 14  PVMMSILMEQLINITDAVFLGHVGEIELGASALAGIYYLAIYMLGFGFSIGLQVMIARRN 73

Query: 77  GAGRQHKIPFEVHQGLILALLVSVPI-IAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIF 135
           G     +      QGL   +++++ + + +   + FI++ +   + +    + Y++   F
Sbjct: 74  GEQHYKETGRTFFQGLYFLMVMAIMLCLLIHLVSPFILQQLITSDEIYQAVIRYLNWRSF 133

Query: 136 AVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVA 195
            +     F A R+F  G++ TK         + +NIP N++ ++      ++G  G  +A
Sbjct: 134 GLLFSFPFLAFRAFLVGVTNTKLLSGAALTAVCINIPFNYLLIF----KLDMGISGAAMA 189

Query: 196 TAIVYWIMLLLLLFYI---VTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEV 252
           ++I  +   L+LL Y+   V  K+     V++       + L++L +L        F  V
Sbjct: 190 SSIAEFGAFLILLLYMCKTVDKKKYGLSAVYD------GRLLMKLLQLSVWSMLHAFISV 243

Query: 253 TLFAVVALLVAPLGSTVVAAHQVALNFSSLVFM----FPMSIGAAVSIRVGHKLGEQDTK 308
             + +  + +  LG T +A   +  + S+L F+    F  + G+ VS  +G   G++   
Sbjct: 244 APWFLFFVAIEHLGKTELAISNITRSVSTLFFVIVNSFASTTGSLVSNLIGGGQGKELFP 303

Query: 309 GAAIAANVGLMTGLATACITALLTVLFREQ-IALLYTENQVVVALA 353
                  +G + GL       +LT L+  Q I   YT N  +V LA
Sbjct: 304 VCRKVLRLGYVVGL-----PLILTALWGNQWIIGFYTNNDYLVKLA 344



 Score = 27.7 bits (60), Expect = 8e-04
 Identities = 18/96 (18%), Positives = 39/96 (40%)

Query: 236 RLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVS 295
           +++ + FPV  ++  E  +    A+ +  +G   + A  +A  +   ++M        + 
Sbjct: 7   QIWLINFPVMMSILMEQLINITDAVFLGHVGEIELGASALAGIYYLAIYMLGFGFSIGLQ 66

Query: 296 IRVGHKLGEQDTKGAAIAANVGLMTGLATACITALL 331
           + +  + GEQ  K        GL   +  A +  LL
Sbjct: 67  VMIARRNGEQHYKETGRTFFQGLYFLMVMAIMLCLL 102