Pairwise Alignments

Query, 457 a.a., multidrug resistance protein NorM from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., MATE efflux family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 80.9 bits (198), Expect = 8e-20
 Identities = 85/414 (20%), Positives = 164/414 (39%), Gaps = 26/414 (6%)

Query: 6   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLL 65
           ++   ++ L  P+ I ++ Q+ +G  D  M    S   +AAV +   +    ++  + + 
Sbjct: 9   QQRMGIVALTWPIFIETLLQSLLGISDIFMLSHYSDNAVAAVGLTTQLMFFMMVMSMMVS 68

Query: 66  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIA-VLFQTQFIIRFMDVEEAMAT 124
                +++Q NGAG+  +        + L+L ++V + A + F    II    +E  +A 
Sbjct: 69  TGASILISQNNGAGQTQQATDIGVASVALSLGLAVVMGASMFFGAHGIISLFALEPEVAG 128

Query: 125 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 184
               Y+          ++  A  +       T+ AM++     L+N+  N+I +Y  FG 
Sbjct: 129 YGNDYLLICGSLSIGLVMNIAFAAILRSYGFTRSAMLVTSSTGLMNVLGNYIALYSPFGL 188

Query: 185 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRL------- 237
           P  G  G  ++T     I  L++L  I               HK  P  ++RL       
Sbjct: 189 PVYGVTGVAISTVTSQIIGALIMLAVI--------------RHKGIPLPMLRLKLLPRST 234

Query: 238 ----FRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAA 293
                R+G   A  +         +   ++ +G+  + A+   LN S  ++ F +++G A
Sbjct: 235 YWSVMRIGLLNAGEMLSYNVAQMTIIYFISQMGTLSLTAYTYGLNISRFIYCFAVALGQA 294

Query: 294 VSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA 353
             I+ G+ +G+Q             + G  T+    L+    R  I    +EN  V+ L 
Sbjct: 295 AQIQTGYYVGKQWFDEITGRVQKYCLVGFITSLAIVLVFYWQRFTIVGWLSENPEVIQLT 354

Query: 354 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGM 407
             LLL +   +      +V   +L+G  D+         S W +G+   +  G+
Sbjct: 355 ALLLLGSIALETGRVFNLVIISALKGAGDVAFPVRVGLFSMWGIGVLLAWFFGL 408