Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  147 bits (372), Expect = 9e-40
 Identities = 111/351 (31%), Positives = 174/351 (49%), Gaps = 18/351 (5%)

Query: 330 LVLAILAVWFGLR--RWIGRALNNITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVI 387
           +  A LAV  GL   +W  R L  + +  +Q T   L  R+      D + V AQL   +
Sbjct: 178 IAAAALAVPLGLAGLQWQQRGLKRLLQLASQTTSDPLIARMYT----DSRGVEAQLEMAM 233

Query: 388 VSTHESLALVTRNCET-LYQTAELSHGSAEQSNQ-------SLAAQNQALLTMAATINQL 439
           +S    L    + C T L  TA    G A+Q++         LA QNQ    +A  IN++
Sbjct: 234 LSQQAHL----KTCLTRLQDTAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINEM 289

Query: 440 DASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRV 499
            A+ +E+A     +   + EA+  +  G +V  + ++ +Q L  ++A    A+++L    
Sbjct: 290 AATTQEVASNVALAAEATREASRLTIHGREVTAETRKAIQQLADSVASTGEAVNQLANDS 349

Query: 500 TSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIR 559
            +I  +VD+I  IAD TNLLALNAAIEAARAG+ GRGFAVVADEVR+LA  T++ T  I 
Sbjct: 350 DAIGGVVDVIKSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEIH 409

Query: 560 DMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATE 619
            ++ +L   A  + Q  +E R +    +    +       I  A+ +I     QI  ATE
Sbjct: 410 QLIEKLQLQARHAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASATE 469

Query: 620 EQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLHKY 670
           EQ     +++  V+ I+    +T     +    +E +A  A  Q A++ ++
Sbjct: 470 EQSAVADEISNNVSTIARLADQTSGDARSSALLSEDLAATAEGQYALVERF 520