Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  133 bits (335), Expect = 2e-35
 Identities = 84/253 (33%), Positives = 137/253 (54%), Gaps = 3/253 (1%)

Query: 392 ESLALVTRNCETLYQTAELSH---GSAEQSNQSLAAQNQALLTMAATINQLDASIREIAG 448
           E+ A+V R  ++  Q ++ +    G+   S QS A Q Q    +A  I Q+ AS++E+A 
Sbjct: 239 EAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVAL 298

Query: 449 VSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDM 508
            +  +   +  A   +A+G +V+ +    +  L   +      + +L      I  ++D+
Sbjct: 299 NAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDV 358

Query: 509 ISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTA 568
           I GIA+ TNLLALNAAIEAARAGEQGRGFAVVADEVR+LAS TS  TT+I+ M+  L T 
Sbjct: 359 IHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTG 418

Query: 569 ASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADV 628
           A ++   +  SR++   ++  +++ + +   I   V  I     QI  A ++Q     ++
Sbjct: 419 AREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEI 478

Query: 629 NKAVAQISEQGQE 641
           ++++  I     E
Sbjct: 479 SQSIVSIRGSSDE 491