Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  140 bits (353), Expect = 1e-37
 Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 3/282 (1%)

Query: 392 ESLALVTRNCETLYQTAELSH---GSAEQSNQSLAAQNQALLTMAATINQLDASIREIAG 448
           E+ A+V R  +   Q ++ +H   G+ + S QS + Q      +A  INQ+ AS++E+A 
Sbjct: 241 EAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVAN 300

Query: 449 VSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDM 508
            +  +   +  A   +A G +V+ +    +  L   +      + EL      I +++D+
Sbjct: 301 NAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDV 360

Query: 509 ISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTA 568
           I GIA+ TNLLALNAAIEAARAGEQGRGFAVVADEVR LAS T + T  I  M+  L   
Sbjct: 361 IRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGG 420

Query: 569 ASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADV 628
           A ++ + +  SR++ + +++ + +   +   I   V  I    +QI  A E+Q   + ++
Sbjct: 421 ARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENI 480

Query: 629 NKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLHKY 670
           N+ +  I               +SA  VAE+A   + ++ ++
Sbjct: 481 NQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522