Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  154 bits (389), Expect = 1e-41
 Identities = 167/674 (24%), Positives = 296/674 (43%), Gaps = 39/674 (5%)

Query: 15  AVFLCITILMISLSV-TSLRGI------ERVGAQFNQLSEQALPFALNNAALTQNFLEQV 67
           A+ + I ++++ L V  SL         ERVG ++ QL+   L  ++   A +   L   
Sbjct: 24  AIIIVIPLIVLGLRVFNSLNASIDTVAQERVGREYLQLTTPVLRTSMLQRAASNRLLAGD 83

Query: 68  KYLGYGTRSQSEQELNQVLNEWQKLDAQAGDEITRLQQNVQLLSSAEAVQQAEQ--LQRE 125
                   S   Q L   L     +DA+ G ++    +  +L  S  ++  + +  L ++
Sbjct: 84  ASAAQDVISNRAQ-LETALANLADMDARQGQQLETENRVQRLRESTRSLMDSIKPGLSQD 142

Query: 126 ILHFQ---QLAQSILKLQQLQLSKTAQISEQ-AKQFRYGLSSIG-PEMGRIASFLAVDNP 180
            +  Q   QLAQ++  +  +  +    + E  A  F   LS+I  P    +A  +     
Sbjct: 143 EVFAQWNEQLAQTLNFIYYVSATSGMVLDEDYASLFLIDLSTIRMPREINVAGQIRGITA 202

Query: 181 EAMDAANRFTASASAMESAFLLLFIEEEMSAAQKYRQELKNRVAGLELAFDDFKEWYPEI 240
             +       +   ++ES   LL IE +      +R EL+  +  L       K   PE+
Sbjct: 203 GLVTGQGLSVSMRGSLES---LLKIELQ------FRAELEQSIRLL-------KRRSPEL 246

Query: 241 KDYASLTAPYEMVLAGFQA-QAVIEQIINKLEDAQQQNKDFASAAEVAQQ-LVTQLNQWS 298
              A ++ P     A   + +  +   +   E + QQ +  ++   V    L    ++  
Sbjct: 247 A--ARISDPITAATAAMDSFRGDLHAYVKGTEFSVQQGQALSARGNVVVSGLYKAQDEIQ 304

Query: 299 TLAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQ 358
           T  Q  +      +      V     I G LL+ A  +++  LR  I   L  +TR L +
Sbjct: 305 TALQNELNTRYDALVLQREVVIAMCVIMGLLLLYAFCSIYRALRLTIDSLLG-VTRRLGE 363

Query: 359 LTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQS 418
                L+ R+ +V   +  ++A  LN +  +   S++ + R    L   A     S   +
Sbjct: 364 ---GDLSARVAVVSKDEVADIANGLNLMADAFASSISHMDRTSYELTDVASRLGASIGLA 420

Query: 419 NQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRL 478
            QS+ AQ      +A  IN++ AS+ ++A  +  +   + EA   S  G++++ Q    +
Sbjct: 421 KQSMNAQQAETEQVATAINEMTASVADVAQNTEGAALAADEANTASRNGLRIMHQAHSTI 480

Query: 479 QALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFA 538
           QAL   + ++   +  L     SI  ++ +IS IAD TNLLALNAAIEAARAGEQGRGFA
Sbjct: 481 QALAEEVELSAQKVQALALHSQSIGGVIQVISTIADQTNLLALNAAIEAARAGEQGRGFA 540

Query: 539 VVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFM 598
           VVADEVR LAS T   T  IR ++ +L +A   + Q +   +++    + ++ +   +  
Sbjct: 541 VVADEVRTLASRTQASTEEIRGIIQQLQSATDAAVQQMQAGQQKAHACISAASDASGSLS 600

Query: 599 QIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAE 658
            I + V  I     QI  A  +Q   + D+N+ V +I          +D    +A+++A 
Sbjct: 601 SISQGVERIVEMNTQIASAAVQQHAVSEDINRNVMEIRNSSGTLMLGIDNNAVTADELAR 660

Query: 659 IAGHQQAMLHKYEL 672
           +A   + ++ +++L
Sbjct: 661 VASDMRNVVARFKL 674