Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  148 bits (374), Expect = 5e-40
 Identities = 112/350 (32%), Positives = 177/350 (50%), Gaps = 22/350 (6%)

Query: 333 AILAVWFGLR--RWIGRALNNITRHLAQLTQHKLNHRL--DLVGPQDFQNVAAQLNQVIV 388
           A L+V  GL    W  R    + R   Q T   L  ++  D  GPQ      A+L   I+
Sbjct: 180 AALSVPLGLLGLSWQQRGTKRLLRLAEQTTSDPLIAQMYTDSRGPQ------ARLEMSIL 233

Query: 389 STHESLALVTRNCET-LYQTAELSHGSAEQSNQ-----SLAAQNQALLT--MAATINQLD 440
           S    +    + C T L  TAE  +  A QSN      S+  + Q + T  +AA INQ+ 
Sbjct: 234 SQEARM----KTCLTRLQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMA 289

Query: 441 ASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVT 500
           A+ +E+A   + +   + +A E + +G  +  + ++ +Q L T++      ++ L +   
Sbjct: 290 ATTQEVASHVNRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAKDSD 349

Query: 501 SIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRD 560
            I  +VD+I GIAD TNLLALNAAIEAARAGE GRGFAVVADEVR+LA  T++ T  I  
Sbjct: 350 EIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHG 409

Query: 561 MMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEE 620
           ++ +L   A+ +   +D  R++    +    E     + I  AVA+I     QI  ATEE
Sbjct: 410 LIAKLQQTATDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATATEE 469

Query: 621 QKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLHKY 670
           Q     ++N+ +A I+    +T  +       + ++ + A  Q +++ ++
Sbjct: 470 QSAVAEEINRNIATIASLADQTSDEARRSAVLSGELTDTANSQYSLVERF 519