Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 661 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  149 bits (375), Expect = 5e-40
 Identities = 116/436 (26%), Positives = 208/436 (47%), Gaps = 22/436 (5%)

Query: 255 AGFQAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIV-------- 306
           AG  A  ++ +++N L  +    + +   A +A+Q+  Q     T  Q  +         
Sbjct: 230 AGRIASVMVNRLLNDLTGSDGVYQAYRQEAALAEQVDKQRQAAETRLQATLGKIGEFGNQ 289

Query: 307 ------QGKQEVTSTISAVTLTQQISGTLLVLA--ILAVW--FGLRRWIGRALNNITRHL 356
                 + K    STI+       I+  L V+A  I+  W  F LRR     L      L
Sbjct: 290 SLAVANEAKAGADSTIATSLSLLLIACLLAVMAAAIIGTWVAFSLRR----PLAAFREVL 345

Query: 357 AQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAE 416
             LT   +  R D+    +F  +   LN+   S  ++   +  + +TL  TA  +   +E
Sbjct: 346 KTLTSGDMRVRFDVSRRDEFGELGGYLNEFTQSLQQTFRQLIGSADTLALTASQNAQISE 405

Query: 417 QSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQ 476
           Q+ + +  Q   L + A+ +N++++++ E+A  + D+       +E + +  K + +   
Sbjct: 406 QTTRVVDEQKDRLNSAASAMNEMESTVEEVARRAQDTRGAVDSTSELTGKVQKRVAETIV 465

Query: 477 RLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRG 536
            ++     +    A   EL +   +I  +VD I  IA+ TNLLALNAAIEAARAGEQGRG
Sbjct: 466 NIRQQAEQVNKASAVTDELQKYGQNIDGIVDAIRTIAEQTNLLALNAAIEAARAGEQGRG 525

Query: 537 FAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKST 596
           FAVVADEVR LAS T   T+ I++M+ ++ +    + + ++ES+ +    +  +      
Sbjct: 526 FAVVADEVRSLASRTQTSTSEIQEMIGQMQSKIHSAVEVMNESQIQSDHCVTLASGADQL 585

Query: 597 FMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQV 656
            +++  AV  IR    QI  ATE+Q     + ++ V  I++  Q+     +    S++ +
Sbjct: 586 LVEMGEAVDVIRDMNIQIAAATEQQSATVQETSRMVTHINDSAQQAADGAEQSAISSQDL 645

Query: 657 AEIAGHQQAMLHKYEL 672
           +++A  Q+ +LH + +
Sbjct: 646 SKMARDQRELLHHFSV 661



 Score = 28.9 bits (63), Expect = 8e-04
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 33/231 (14%)

Query: 254 LAGFQAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIVQGKQEVT 313
           L G   + V E I+N  + A+Q NK        A  +  +L ++            Q + 
Sbjct: 452 LTGKVQKRVAETIVNIRQQAEQVNK--------ASAVTDELQKYG-----------QNID 492

Query: 314 STISAV-TLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNHRLDLVG 372
             + A+ T+ +Q +   L  AI A   G +      + +  R LA  TQ   +   +++G
Sbjct: 493 GIVDAIRTIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQTSTSEIQEMIG 552

Query: 373 PQD--FQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALL 430
                  +    +N+  + +   + L +   + L +  E      + + Q  AA  Q   
Sbjct: 553 QMQSKIHSAVEVMNESQIQSDHCVTLASGADQLLVEMGEAVDVIRDMNIQIAAATEQ--- 609

Query: 431 TMAATINQLDASIREIAGVSHDSYTDSVEAAEHSA---QGVKVIEQNQQRL 478
             +AT+ +    +  I    +DS   + + AE SA   Q +  + ++Q+ L
Sbjct: 610 -QSATVQETSRMVTHI----NDSAQQAADGAEQSAISSQDLSKMARDQREL 655