Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  150 bits (378), Expect = 2e-40
 Identities = 99/364 (27%), Positives = 180/364 (49%), Gaps = 2/364 (0%)

Query: 311 EVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHK--LNHRL 368
           EV + +    L    S  L+ LA + +   +   + + +  + R    + + +  L  RL
Sbjct: 273 EVFALLDEAALKILFSTLLIALAFVVLSGFVASSVSKPIAAVARMFRDIGEGEGDLRQRL 332

Query: 369 DLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQA 428
            + G  +   +A+  N  I    +S+  V +  E L ++A      A+Q+ +    Q   
Sbjct: 333 PVQGEDELAQLASGFNSFISKIQDSVIEVAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDR 392

Query: 429 LLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVN 488
            + +   IN++ A++ EIA  +  +   + +A   S  G KV+ Q +  +  L   ++  
Sbjct: 393 TMQVVTAINEMGATVNEIAANAAQAAEAAKDADRASGSGQKVVTQARDTINQLSKDVSQV 452

Query: 489 DAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLA 548
              +  L     SI  ++D+I  I++ TNLLALNAAIEAARAGE GRGFAVVADEVR LA
Sbjct: 453 GEVIESLATHTKSIGSILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLA 512

Query: 549 SDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIR 608
           S T+  T  ++ M+++L + ++++  A+ +SR      + + +E  +T   I   +  I 
Sbjct: 513 SRTAASTDEVQVMIDKLQSESARAVNAMSQSRSRSQEGVSAVDEASNTLSGISDQIGLIS 572

Query: 609 TRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLH 668
               Q+  ATEEQ     D+N+ V +I++  Q T     A   +++ +  +A     ++ 
Sbjct: 573 DMNIQVAAATEEQSTVVEDINRNVTEINDITQRTAATAQAAARASKDLNALATRLDQLVA 632

Query: 669 KYEL 672
           ++++
Sbjct: 633 RFKV 636



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 76/360 (21%), Positives = 135/360 (37%), Gaps = 61/360 (16%)

Query: 223 VAGLELAFDDFKEWYPEIKDYASLTAPYEMVLAGFQAQAVIEQIINKLEDAQQQNKDFAS 282
           +A +   F D  E   +++    +    E+     Q  +     I+K++D+         
Sbjct: 311 IAAVARMFRDIGEGEGDLRQRLPVQGEDELA----QLASGFNSFISKIQDS------VIE 360

Query: 283 AAEVAQQLVTQLNQWSTLAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLR 342
            A+ ++QL       S  AQQ +   + +   T+  VT   +                  
Sbjct: 361 VAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDRTMQVVTAINE------------------ 402

Query: 343 RWIGRALNNITRHLAQLTQ-HKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNC 401
             +G  +N I  + AQ  +  K   R    G    Q V  Q    I    + ++ V    
Sbjct: 403 --MGATVNEIAANAAQAAEAAKDADRASGSG----QKVVTQARDTINQLSKDVSQVGEVI 456

Query: 402 ETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSV-EA 460
           E+L  T   S GS     ++++ Q   L   AA    ++A+    AG       D V   
Sbjct: 457 ESL-ATHTKSIGSILDVIRAISEQTNLLALNAA----IEAARAGEAGRGFAVVADEVRNL 511

Query: 461 AEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQR----VTSIREMVDMISGIADST 516
           A  +A     ++    +LQ+ E+  AVN  AMS+   R    V+++ E  + +SGI+D  
Sbjct: 512 ASRTAASTDEVQVMIDKLQS-ESARAVN--AMSQSRSRSQEGVSAVDEASNTLSGISDQI 568

Query: 517 NLLA-LNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQA 575
            L++ +N  + AA             +E   +  D ++  T I D+       A  + +A
Sbjct: 569 GLISDMNIQVAAA------------TEEQSTVVEDINRNVTEINDITQRTAATAQAAARA 616