Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  142 bits (359), Expect = 4e-38
 Identities = 156/682 (22%), Positives = 294/682 (43%), Gaps = 51/682 (7%)

Query: 6   NLSLTQTLGAVFLCITILMISLSVTSLRGIERVGAQFNQLSEQALPFALNNAA------L 59
           +L L+Q L   F  + +L++ ++V   RG+      F   +E  L  + +NAA      L
Sbjct: 4   SLRLSQQLYYSFGVVIVLLLVVTVAGYRGLTE---GFKNFTEYRLLASSSNAASEAEATL 60

Query: 60  TQNFLEQVKYLG------YGTRSQSEQELNQVLNEWQKLDAQAGDEITRLQQNVQLLSSA 113
            +  ++  +YL       Y +  ++  ELNQ ++  ++L+  AG +    Q +  + + A
Sbjct: 61  LRAQVDVFRYLNTPDNTTYQSFQKNIAELNQDISHAKELELDAGRDSLLAQADGLVKNYA 120

Query: 114 EAVQQAEQLQREILHFQQLAQSILKLQQLQLSKTAQISEQAKQFRYGLSSIGPEMGRIAS 173
                 E +  +     Q+ + +L      LS    +++        ++++  E      
Sbjct: 121 STF---EAITGDFAARNQVVRDLL--DPAGLSMRENVTDV-------ITAMYQEGDADGL 168

Query: 174 FLAVDNPEAMDAANRFTASASAMESAFLLLFIEEEMSAAQKYRQELKNRVAGLELAFDDF 233
           F+A  + E +  A  F ++       FL+   EE+   A +    L   + GL+ + +  
Sbjct: 169 FVAARSQEKLMLARLFASN-------FLISNREEDYKRALQELSALDGTINGLK-SVESA 220

Query: 234 KEWYPEIKDYASLTAPYEMVLAGFQAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQ 293
                +++   +    Y   L       +I+    ++++    N      A V Q+    
Sbjct: 221 TVIADKVEGIDTGRTQYRDALKA--VYGIIQNQNGRIDEGL--NVIGPKVAAVLQEYNKA 276

Query: 294 LNQWSTLAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNIT 353
           + Q       +  Q  +    T+  V +   +    L + ++     +RR +G     I 
Sbjct: 277 IEQQQGELGLYAQQKSENAIDTVVVVAIAAMLMAIWLAITVVRA---IRRPVGGEPREIA 333

Query: 354 RHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHG 413
               ++    L       G        A++N  +      L   +R   TL  ++    G
Sbjct: 334 SIAREIAGGNLGQNFLREGSTGIYAAMAEMNDNLRRIVSELNDASR---TLGDSSSGMLG 390

Query: 414 SAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQ 473
             E+S ++  +Q   L   A+ + ++  ++ +IA  +  +   + EA  H+ +G+ V+E 
Sbjct: 391 VTEESRKNSESQADQLAHTASAMQEMTHTVDDIARNAQRASEMASEADHHAQEGMGVVED 450

Query: 474 NQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQ 533
            ++ +  L   +      +  L +   ++  ++D+I GIA+ TNLLALNAAIEAARAGEQ
Sbjct: 451 TRRSIMVLVDNITDVSGIIENLEKETENVGSILDVIRGIAEQTNLLALNAAIEAARAGEQ 510

Query: 534 GRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEV 593
           GRGFAVVADEVR LAS T   T  I+ ++  L    ++SR++V+  R  +  A Q+SE+ 
Sbjct: 511 GRGFAVVADEVRNLASRTQNSTEEIQALIGRL---QAESRRSVESMRVNVTEATQTSEKA 567

Query: 594 KSTFM---QIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAML 650
                    I  +V  IR    QI  A EEQ      +N +V +IS   +      + + 
Sbjct: 568 NKAIAALGAIADSVMAIRDMNHQIAVAAEEQATVVGTINVSVEEISGLARMNAAGSEQVQ 627

Query: 651 ESAEQVAEIAGHQQAMLHKYEL 672
            SA  ++EI+     ++ +++L
Sbjct: 628 NSANGISEISSKLSGIVGRFKL 649