Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  130 bits (326), Expect = 3e-34
 Identities = 97/327 (29%), Positives = 161/327 (49%), Gaps = 9/327 (2%)

Query: 329 LLVLAILAVWFGLR--RWIGRALNNITRHLAQLTQH-KLNHRLDLVGPQDFQNVAAQLNQ 385
           L V+  L    GL    ++ R++ +I   + +  +   L+ R+ L    +  ++    N 
Sbjct: 317 LAVVLFLVAMMGLSVMGYLNRSVVHIENQMRRAREEFDLSTRITLDSTDELGSLGNAFNG 376

Query: 386 VIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIRE 445
           ++      +  V  N   +    +     + Q    +A  +     +A+ + ++ A++ +
Sbjct: 377 MMNDFEAVIHQVKTNSLKVTDAVKRMESHSNQMRHDVAQGHSEAEQVASAMTEMSATVSQ 436

Query: 446 IAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREM 505
           IA  + ++ + S +A + +  G K +    + + AL + +     A+++L+  +  I  +
Sbjct: 437 IASNAVEAASASGKANQEARTGNKEVGNTGKTISALASEIDAAAIAITKLDTDIQGIVSV 496

Query: 506 VDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNEL 565
           +++ISGIA+ TNLLALNAAIEAARAGE GRGFAVVADEVR LA      TT+IR M   L
Sbjct: 497 LEVISGIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRAQSSTTDIRTMTERL 556

Query: 566 VTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAH---IRTRVEQITQATEEQK 622
              A   R AVD   +    A  S +EV     ++ R V +   I +  EQI  AT EQ 
Sbjct: 557 KEGA---RVAVDAMSRGQTQAQASVQEVNHAGEELRRIVDYVSVIDSMNEQIAAATHEQS 613

Query: 623 RATADVNKAVAQISEQGQETKRQLDAM 649
               +VN+   +ISE  Q T +  D +
Sbjct: 614 AVAEEVNRNALRISEIYQNTHQVADEL 640



 Score = 35.4 bits (80), Expect = 9e-06
 Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 24/180 (13%)

Query: 409 ELSHGSAEQSNQSLAAQNQALLT-----MAATINQLDASIREIAGVSHDSYTDSVEAAEH 463
           E+  G AEQ+N  L A N A+       M      +   +R +A  +  S TD     E 
Sbjct: 498 EVISGIAEQTN--LLALNAAIEAARAGEMGRGFAVVADEVRSLAQRAQSSTTDIRTMTER 555

Query: 464 SAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNA 523
             +G +V      R Q          A++ E+N     +R +VD +S + DS N      
Sbjct: 556 LKEGARVAVDAMSRGQTQA------QASVQEVNHAGEELRRIVDYVS-VIDSMNEQI--- 605

Query: 524 AIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEM 583
              AA   EQ    + VA+EV + A   S+   N   + +EL         AVD   KE+
Sbjct: 606 ---AAATHEQ----SAVAEEVNRNALRISEIYQNTHQVADELGRINDDLLSAVDAMGKEV 658