Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  158 bits (399), Expect = 7e-43
 Identities = 127/483 (26%), Positives = 226/483 (46%), Gaps = 17/483 (3%)

Query: 184 DAANRFTASASAMESAFLLLFIEEEMSAAQKYRQELKNRVAGLELAFDDFKEWYPEIKDY 243
           D     TAS S ++   L        S   KYRQ+        + A D        +KDY
Sbjct: 61  DLYQALTASQSYVQHRLL------GQSGGDKYRQDFDENA---QQALDRMALVLSLLKDY 111

Query: 244 ASLTAPYEMVLAGFQAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQLNQWSTLAQQ 303
             L +        + A       +  + D+Q      +   EV   L   L        +
Sbjct: 112 PELQSNKAQFQREYDAWLNAATQVFTMVDSQSPVAAASYNDEVVMPLFKALRGHYDKTGE 171

Query: 304 HIVQGKQEVTSTI-----SAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQ 358
            +     EVTS         + L   I   +++ +I++V +G R    R +  +   +A 
Sbjct: 172 WVKNKADEVTSEALIASQRGINLLFGIIILVILASIVSVVYGPRLVTSR-VEQLDTMIAA 230

Query: 359 LTQHK--LNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAE 416
           ++  +  L  RLD  G  +   +A   N +++   + +  +  +  +L       + SA+
Sbjct: 231 ISDGEGDLRGRLDDSGRDELSLLARTFNGLMMKLQQLIGTIKSDAVSLDARVTGLNHSAK 290

Query: 417 QSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQ 476
           +S +    QN  L  +A  ++QL  ++ E+A  S ++ +D+  A     +   V+ Q+ +
Sbjct: 291 ESEKISTEQNANLEQIATAVHQLSHAVHEVASSSQNALSDTEHANNLIKESNAVVGQSVE 350

Query: 477 RLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRG 536
           R+Q L   ++     +  L      I  ++D+I GIA+ TNLLALNAAIEAARAGEQGRG
Sbjct: 351 RVQQLAGVVSHASEVIQNLASESKQIVTVLDVIRGIAEQTNLLALNAAIEAARAGEQGRG 410

Query: 537 FAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKST 596
           FAVVADEVR LAS T + T +I+ M+  L +  S++  A+D   +++ + + +S  +   
Sbjct: 411 FAVVADEVRTLASRTQQSTEDIQRMVAGLESGVSEAVSAIDSGTRQVDSVVDASGSITKA 470

Query: 597 FMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQV 656
             +++ AV+  +  +  I  ATE+Q +   +VN+ ++ ++   QE+   +    E+A+++
Sbjct: 471 LAEVDEAVSRTKDLIYLIATATEQQSKVVDEVNQNISSLNLLSQESIGVVRRTREAADEI 530

Query: 657 AEI 659
           A+I
Sbjct: 531 AQI 533