Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  132 bits (333), Expect = 3e-35
 Identities = 117/407 (28%), Positives = 189/407 (46%), Gaps = 22/407 (5%)

Query: 277 NKDFASAAEVAQQLVTQLNQWSTLAQQHI-VQGKQEVTSTISAVTLTQQISGTLLVLAIL 335
           N+  ASA      +V +   W  +    I V   QE         L   I+  L V+ IL
Sbjct: 153 NRPNASAPSPKMSVVKRFTPWGWIVGTGIYVDDIQEEMQAFIYKYLLICIAVWLPVILIL 212

Query: 336 AVWFGLRRWIGR-------ALNNITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIV 388
            V   + R I         A  NI R    LT      RL+  G  + + VAA  N+ + 
Sbjct: 213 GV---ISRSISAPMADTIAAFENIARGEGDLTL-----RLEESGRDELKQVAASFNEFVA 264

Query: 389 STHESLALVTRNCETLYQTAELSHGSAEQSNQS--LAAQNQALLTMAAT-INQLDASIRE 445
                 ALV     ++  + EL+ G A+ S Q+  + A  QA     AT IN++  +  E
Sbjct: 265 KIQ---ALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSVATAINEMSMASSE 321

Query: 446 IAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREM 505
           +A  +  +   +  A   +   V V++    +++ L   L V       L      I ++
Sbjct: 322 VASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISSGKIGQI 381

Query: 506 VDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNEL 565
           +D+I GIA+ TNLLALNAAIEAARAGE GRGFAVVADEVR LAS T + T  I  ++  +
Sbjct: 382 LDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQEINAIIEAI 441

Query: 566 VTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRAT 625
             +      +V  ++ +    +  + +V      I+ ++  I     QI  ATEEQ    
Sbjct: 442 RASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATATEEQSAVI 501

Query: 626 ADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLHKYEL 672
           A++N  V +I++   E +++ + +  ++EQ+   +   ++++  ++L
Sbjct: 502 AELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTFKL 548