Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  154 bits (388), Expect = 2e-41
 Identities = 104/367 (28%), Positives = 186/367 (50%), Gaps = 7/367 (1%)

Query: 312 VTSTISAVTLTQQISGTLLVLAILA--VWFGLRRWIGRALNNITRHLAQLTQHKLNH--- 366
           +T T SA+   + +  +++VL +++  V   L  +IGR L+   RHL         H   
Sbjct: 296 LTDTRSALANAKSLMVSVIVLMLVSGLVVILLSLFIGRYLHASLRHLYHKVTESQKHYDL 355

Query: 367 --RLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAA 424
             R+DL G  +   + +  N ++    + + +V  N + L   ++   G A    + +A 
Sbjct: 356 SVRVDLKGKDEIGQLGSAFNHMMADFEKVIGMVRTNTQGLLTASQEMEGCARIMREDVAL 415

Query: 425 QNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETT 484
            +  +  +A+ + ++ A+++EIA  +  +   S +A + + +G   +E+    +  L   
Sbjct: 416 GHSEVDQVASAMTEMSATVQEIAQNAVQASEASAQANKEAKEGSLEVERTADSINELAQE 475

Query: 485 LAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEV 544
           +A    A++ L++ +  I +++ +ISGIA+ TNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 476 IADAAQAINNLDEDIKGIVDVLGVISGIAEQTNLLALNAAIEAARAGEMGRGFAVVADEV 535

Query: 545 RKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAV 604
           R LA      T +IR M   L   A  + +A++  R +   ++  S+      ++I   V
Sbjct: 536 RSLAQRAQTSTEDIRSMTERLERGAKIAVKAMESGRNKAEISVVESKRAGEELIRIVSEV 595

Query: 605 AHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQ 664
           + I +  EQI  AT EQ   + +VN+   +IS+  + T    D + +  E +        
Sbjct: 596 SVIDSMNEQIAAATHEQSAVSEEVNQNAMKISDIYRNTHEVSDRLSQLNESLLNDVSAMS 655

Query: 665 AMLHKYE 671
            ++ K++
Sbjct: 656 ELVSKFK 662



 Score = 32.7 bits (73), Expect = 6e-05
 Identities = 88/460 (19%), Positives = 169/460 (36%), Gaps = 81/460 (17%)

Query: 239 EIKDYASLTAPYEMVLAGFQAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQLN-QW 297
           ++ ++ + TA +E+  A  Q  + + Q+IN+L D + +    + +        T+LN   
Sbjct: 96  QLNNFKAFTASHELPKAFAQQMSQVNQMINQLGDIRSRVDSLSISVPEEVAYYTKLNGLL 155

Query: 298 STLAQQHIVQG--KQEVTSTISAVTLTQQISGTLLVLAILAVWFG--------------- 340
             +  Q   QG  +Q    + S     Q      +  A+L+  FG               
Sbjct: 156 LEIVDQTSQQGASRQIAVESASFAAYLQMKERAGIERAVLSSTFGNSAFKPGMFLKFVNL 215

Query: 341 -------LRRWIGRALNNITRHLAQL----TQHKLNHRLDLVGPQDFQNVAAQLNQVIVS 389
                    R++  A + +     Q+    T   +N   D    QD   ++ Q      S
Sbjct: 216 VSEQNTYQERFLALATDKVNADYQQVVSSPTFMAVNALRDKAMSQDAGALSGQ------S 269

Query: 390 THESLALVTRNCETLYQ-TAELSHGSAEQSNQSLAAQNQALLTMAATI------------ 436
           + +  A  T   + L Q   +LSH     +  +LA     ++++   +            
Sbjct: 270 STDWFAKSTARIDALRQFERQLSHHLLTDTRSALANAKSLMVSVIVLMLVSGLVVILLSL 329

Query: 437 ---NQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMS 493
                L AS+R +       Y    E+ +H    V+V  + +  +  L           S
Sbjct: 330 FIGRYLHASLRHL-------YHKVTESQKHYDLSVRVDLKGKDEIGQLG----------S 372

Query: 494 ELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSK 553
             N  +    +++ M+    ++  LL  +  +E   A       A+   EV ++AS  ++
Sbjct: 373 AFNHMMADFEKVIGMVR--TNTQGLLTASQEMEGC-ARIMREDVALGHSEVDQVASAMTE 429

Query: 554 QTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQ 613
            +  ++++    V A+  S QA  E++       + S EV+ T   I      I    + 
Sbjct: 430 MSATVQEIAQNAVQASEASAQANKEAK-------EGSLEVERTADSINELAQEIADAAQA 482

Query: 614 ITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESA 653
           I    E+ K    DV   ++ I+E  Q     L+A +E+A
Sbjct: 483 INNLDEDIK-GIVDVLGVISGIAE--QTNLLALNAAIEAA 519