Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  160 bits (406), Expect = 1e-43
 Identities = 112/368 (30%), Positives = 185/368 (50%), Gaps = 7/368 (1%)

Query: 307 QGKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNH 366
           Q  QE  S    + L    SG  ++   ++  F +RR +  ++  +      +    L  
Sbjct: 210 QASQETVSLY--IWLVAIFSGVAMLAISVSSVFIIRR-VSLSVVQLEETAVDIAAGDLTK 266

Query: 367 RLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQN 426
           R+ L G  +F ++A  +N++     +++     +   L   AE +   + Q+ +++  Q 
Sbjct: 267 RIRLGGHDEFAHIAEHVNRIASDFQQAVTNTHASTSRLASAAEENAVVSTQTQRNVLDQQ 326

Query: 427 QALLTMAATINQLDASIREIAGVSHDSYTDSVEA--AEHSAQGVKVIEQNQQRLQALETT 484
           Q    +A  I++  A++RE+A  +  + T S +A  A H AQGV  ++++   ++AL   
Sbjct: 327 QQTQLIATAIHEFTATVREVAQSAASAATASQDANGAAHGAQGV--VDESIAVIEALAQE 384

Query: 485 LAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEV 544
           L+    AM+ L Q    I  +VD+I  I++ TNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 385 LSRASEAMTLLAQHSNEIGTVVDVIQAISEQTNLLALNAAIEAARAGEQGRGFAVVADEV 444

Query: 545 RKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAV 604
           R LA  T   T  I+ M+  L   A  S Q +    +++  ++  S  V+    QI  ++
Sbjct: 445 RSLAKRTQDSTEEIQKMIQRLQQGARDSMQMMQSGTEQVKLSVDKSLMVRDALQQILNSI 504

Query: 605 AHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQ 664
             I     QI  A+EEQ   T ++N  +  ISE   +T        ++ E +A +A   +
Sbjct: 505 EEINALNAQIATASEEQSSVTEEININITNISEISDQTAEGARQSSDATEDLARLAESME 564

Query: 665 AMLHKYEL 672
           A +  Y++
Sbjct: 565 ADIAHYKV 572



 Score = 25.0 bits (53), Expect = 0.010
 Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 22  ILMISLSVTSLRGIERVGAQFNQLSEQALPFALNNAALTQNFLEQVKYLGYGTRSQSEQE 81
           +L ++ ++ + R  E+ G  F  ++++    A      T+   + ++ L  G R     +
Sbjct: 418 LLALNAAIEAARAGEQ-GRGFAVVADEVRSLAKRTQDSTEEIQKMIQRLQQGARDS--MQ 474

Query: 82  LNQVLNEWQKLDAQAGDEITRLQQNVQLLSSAEAVQQAEQLQREILHFQQLAQSILKLQQ 141
           + Q   E  KL       +    Q  Q+L+S E +     L  +I    +   S+ +   
Sbjct: 475 MMQSGTEQVKLSVDKSLMVRDALQ--QILNSIEEINA---LNAQIATASEEQSSVTEEIN 529

Query: 142 LQLSKTAQISEQAKQFRYGLSSIGPEMGRIASFLAVD 178
           + ++  ++IS+Q  +     S    ++ R+A  +  D
Sbjct: 530 INITNISEISDQTAEGARQSSDATEDLARLAESMEAD 566