Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (450), Expect = 1e-48
 Identities = 167/680 (24%), Positives = 300/680 (44%), Gaps = 29/680 (4%)

Query: 10  TQTLGAVFLCITILMISLSVTSLRGIERVGAQFNQLSEQALPFALNNAALTQNFLEQVKY 69
           T+ +G  F  +T+L+I L V SL   + + +    L + +LP   ++  LTQN   Q K 
Sbjct: 7   TRVIGG-FSVVTLLLIVLGVASLVTNDNIKSSTLVLQDLSLPALKSSNGLTQNLALQEKQ 65

Query: 70  LGYGTRSQSEQELNQVLNEWQKLDAQAGDEITRLQQNVQLLSSAEAVQQAEQLQREILHF 129
           L     S+  +EL QV +++  L      E+ +L + +Q            Q++    ++
Sbjct: 66  LLVAFHSKQSKELPQVRSQFTSLSKGFITELDQLNRIIQ----GHEDNLGGQIKSLRANY 121

Query: 130 QQLAQSILKLQQLQLSKTAQISEQAKQFRYGLSSIGPEMGRIASFL--AVDNPEAMDAAN 187
           Q    + LK+ Q +  ++ Q  E        L S+       AS L   +D   + D   
Sbjct: 122 QSFNDNSLKMMQAR-EQSLQTQESLVD---NLESLEGAADDTASLLLDLIDLETSQDPTE 177

Query: 188 R-FTASASAMESAFLLLFIE-------EEMSAAQKYRQELKNRVAGLELAFDDFKEWYPE 239
           R   A+AS ++++F  L          +E S  +   +EL   ++  +   +     +  
Sbjct: 178 REIAATASNIDNSFSNLITSSYDLVNAKEKSKYETILKELDYIISEAQNKLEYVSRHWEG 237

Query: 240 IKDYASLTAPYEMVLAGFQAQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQLNQWST 299
           + D  +L          F      + I+ +       N   +      +   T +NQ   
Sbjct: 238 VIDQEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQLLNTVESNATAVNQSMG 297

Query: 300 LAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLAILA------VWFGLRRWIGRALNNIT 353
              + I    Q V  ++ A+      S   L L ++A      V   + R +  +L+ + 
Sbjct: 298 SLNKAIESTSQAV--SVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLDKVN 355

Query: 354 RHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHG 413
             L  L    L H+LD  G  +F  ++   N+++ S    +  +      L   AE +  
Sbjct: 356 NALNILASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSA 415

Query: 414 SAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVI-E 472
              Q+   +  Q   +  +A    QL +S  +++  S D   + +  A+  AQ ++ I +
Sbjct: 416 ITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVS-TSADEALNQIRQADEEAQHMRAIAD 474

Query: 473 QNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGE 532
           +N++ + AL   +A     +++++    SI  ++D+I GIA+ TNLLALNAAIEAARAGE
Sbjct: 475 ENKRTILALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGE 534

Query: 533 QGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEE 592
           QGRGFAVVADEVR LAS T   T  I+ M+  L     ++   ++  R++  + ++ +E+
Sbjct: 535 QGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQ 594

Query: 593 VKSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLES 652
                  I  AV +       I  A +EQ   +  V++ +  I+   +ET    D   +S
Sbjct: 595 ANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQS 654

Query: 653 AEQVAEIAGHQQAMLHKYEL 672
           + QVA++A   QA + ++++
Sbjct: 655 SHQVAQLAEELQASVGEFKV 674