Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  160 bits (404), Expect = 2e-43
 Identities = 102/348 (29%), Positives = 177/348 (50%), Gaps = 8/348 (2%)

Query: 321 LTQQISGTLLVLAIL--AVWFGLRRWIGRALNNITRHLAQLTQH------KLNHRLDLVG 372
           L ++ +  +LV  +L  A + GL  ++  +++     +A + Q        L  RL + G
Sbjct: 279 LLEESAYQILVWTVLIAAAFIGLSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEG 338

Query: 373 PQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALLTM 432
             +   +A   N  I     S+  VT     L   A+     A+Q+      Q    + +
Sbjct: 339 NDELAQLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMV 398

Query: 433 AATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAM 492
              IN++ A++ EIAG +  +  ++ +A   S+ G  V+ + +  +  L   +      +
Sbjct: 399 VTAINEMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVI 458

Query: 493 SELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTS 552
             L    TSI  ++D+I  ++D TNLLALNAAIEAARAGE GRGFAVVA+EVR LAS T+
Sbjct: 459 ESLATHTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTA 518

Query: 553 KQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVE 612
             T  ++ M++ L + A+++ +A+ +S+      +Q+ +E   T  +I + +  I     
Sbjct: 519 ASTDEVQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNI 578

Query: 613 QITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIA 660
           Q+  ATEEQ     D+N+ V +ISE  Q T     A+ ++++ + ++A
Sbjct: 579 QVAAATEEQSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLA 626