Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  157 bits (398), Expect = 9e-43
 Identities = 103/390 (26%), Positives = 201/390 (51%), Gaps = 5/390 (1%)

Query: 285 EVAQQLVTQLNQWSTLAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLRRW 344
           EVA +    L   +  A Q +V   +    T   +++   I G   +  ++ + F L R 
Sbjct: 160 EVAGEETMNLRHENDRAAQEMVLQSENAYKTAKMLSI---IVGFSTIFFVVVMAFLLIRQ 216

Query: 345 IGRALNNITRHLAQLTQHKLNHRLDL--VGPQDFQNVAAQLNQVIVSTHESLALVTRNCE 402
           I   +  + +   +++   L ++L++      +F  +A   N++  + H  ++ V+ +  
Sbjct: 217 IQNPIMWLLKQTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIV 276

Query: 403 TLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAE 462
            L   AE     A  S+ ++  Q   L  +A  ++++ A+++++A  ++D+   + +A++
Sbjct: 277 QLSSAAEEISSVALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASD 336

Query: 463 HSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALN 522
            + QG + +  +  R+  +   +      + +L     +I  ++++I GIA+ TNLLALN
Sbjct: 337 TATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALN 396

Query: 523 AAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKE 582
           AAIEAARAGEQGRGFAVVADEVR LA  T   T++I  +++EL   A+++ + + +S++ 
Sbjct: 397 AAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEM 456

Query: 583 MVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQET 642
           M+  +  + E   +  +I  +V+ I     QI  ATEEQ   + ++N+ VA IS   ++ 
Sbjct: 457 MIETVCKAREAGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDV 516

Query: 643 KRQLDAMLESAEQVAEIAGHQQAMLHKYEL 672
                 M  +   ++ +A   Q M+ K+ +
Sbjct: 517 ATGAKQMAMACNDLSHLATQLQDMVKKFHI 546



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 92/534 (17%), Positives = 204/534 (38%), Gaps = 63/534 (11%)

Query: 5   KNLSLTQTLGAVFLCITILMISLSVTSLRGIERVGAQFNQLSEQALPFALNNAALTQNFL 64
           KN++L Q L +VF  +++L++ ++  S+  +  + +   +++E  +P   ++A +    L
Sbjct: 3   KNMTLAQRLISVFFILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPSIRSSAQMHIALL 62

Query: 65  EQVK-----YLGYGTRSQSEQELNQVLNEWQKLDAQAG-DEITRL--------QQNVQLL 110
           +  +      +   T   +  E+++   E  K + +AG  +  +L        Q  ++L 
Sbjct: 63  DARRNELNMVIDVMTHDSAAIEISKQRFETAKSEFEAGAQQYAKLNFVSEQDEQLFIKLG 122

Query: 111 SSAEAVQQAEQLQREILHFQQLAQSILKLQQLQLSKTAQISEQAKQFRYGLSSIGPEMGR 170
            +AE    A       +    +A + + ++ L         E+    R+       EM  
Sbjct: 123 EAAEKYFSAHSSLVSAIDQGDMASANIMIKTLTRQTLEVAGEETMNLRHENDRAAQEM-V 181

Query: 171 IASFLAVDNPEAMDAANRFTASASAMESAFLLL-FIEEEMSAAQKYRQE-----LKNRVA 224
           + S  A    + +     F+     +  AFLL+  I+  +    K   E     L N++ 
Sbjct: 182 LQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLTNKLN 241

Query: 225 GLELAFDDF---KEWYPEIKDYASL------TAPYEMVLAGFQAQAVIEQIINKLEDAQQ 275
               A D+F    E + E++D   +       +  ++  A  +  +V     N +E  Q 
Sbjct: 242 MNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQN 301

Query: 276 QNKDFASAAEVAQQLVTQLNQ-------WSTLAQQHIVQGKQEVTSTISAVTLTQQISGT 328
           +    A+A    Q  V  + +        +T A     QG + V  +I  +    +++G 
Sbjct: 302 ELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRI---DKVAGA 358

Query: 329 LLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIV 388
           +   A++           R L + +R++  +        L+++     Q +A Q N + +
Sbjct: 359 IEATAVVI----------RKLGDDSRNIGMV--------LEVI-----QGIAEQTNLLAL 395

Query: 389 STHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAG 448
           +     A            A+     A+++  S +  N  +  +    N+ + ++++   
Sbjct: 396 NAAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQE 455

Query: 449 VSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSI 502
           +  ++   + EA E  A+    +    Q    + T      A   ELN+ V +I
Sbjct: 456 MMIETVCKAREAGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANI 509