Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  145 bits (366), Expect = 6e-39
 Identities = 91/309 (29%), Positives = 158/309 (51%)

Query: 364 LNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLA 423
           L  RL + G  +   +A   N  I    +S+  V +  E L  +A+     A+Q+ +   
Sbjct: 334 LRQRLPVNGKDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSH 393

Query: 424 AQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALET 483
            Q    + +   IN++ A++ EIA  +  +   + +A   S  G  V+ + +  +  L  
Sbjct: 394 EQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSH 453

Query: 484 TLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADE 543
            +      +  L     SI  ++D+I  I++ TNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 454 DVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADE 513

Query: 544 VRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERA 603
           VR LAS T+  T  ++ M+++L + AS++  A+ +SR      + + +E   + + I + 
Sbjct: 514 VRNLASRTAASTNEVQGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKR 573

Query: 604 VAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQ 663
           +  I     Q+  ATEEQ     D+N+ V +I++  Q T     A  +++  + ++A   
Sbjct: 574 IGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTASTAQAAAQASLALNQLAHRL 633

Query: 664 QAMLHKYEL 672
             ++ K+++
Sbjct: 634 DTLVAKFKV 642



 Score = 33.5 bits (75), Expect = 3e-05
 Identities = 59/284 (20%), Positives = 119/284 (41%), Gaps = 29/284 (10%)

Query: 267 INKLEDAQQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIVQGKQEVTSTISAVTLTQQIS 326
           I+K++D+          A+ ++QL       S  AQQ +    ++   T+  VT   ++ 
Sbjct: 357 ISKIQDS------VIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMG 410

Query: 327 GTLLVLAILAVWFGLRRWIGRALNN-----ITRHLAQLTQHKLNHRLDLVGPQDFQNVAA 381
            T+  +A  A    +        +N     +TR  A+ T ++L+H ++ VG +  +++A 
Sbjct: 411 ATVNEIASNAAQAAVAAKDADTESNSGQVVVTR--ARDTINQLSHDVEQVG-EVIESLAT 467

Query: 382 QLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLA-----AQNQALLTMAATI 436
              + I    + +  ++     L   A +    A ++ +  A      +N A  T A+T 
Sbjct: 468 H-TKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAAST- 525

Query: 437 NQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLA-VND------ 489
           N++   I ++   +  + +   ++   S +GV  +++  Q L  +   +  ++D      
Sbjct: 526 NEVQGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVA 585

Query: 490 AAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQ 533
           AA  E +  V  I   V  I+ I   T   A  AA +A+ A  Q
Sbjct: 586 AATEEQSTVVEDINRNVTEINDITQRTASTA-QAAAQASLALNQ 628