Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  188 bits (477), Expect = 8e-52
 Identities = 164/679 (24%), Positives = 306/679 (45%), Gaps = 28/679 (4%)

Query: 10  TQTLGAVFLCITILMISLSVTSLR---GIERVGAQFNQLSEQALPFALNNAALTQNFLEQ 66
           T+ +G  F  +T+L++ L  TS      ++   A   QLS   LP   +   LT++  EQ
Sbjct: 7   TRVIGG-FSVVTLLLVLLGFTSYLTNISLKDSSAMMQQLS---LPALKSTNHLTESLSEQ 62

Query: 67  VKYLGYGTRSQSEQELNQVLNEWQKLDAQAGDEITRLQQNVQLLSSAEAVQQAEQLQREI 126
            + +     +   + +  +   +    AQ  +EI  L   VQ  ++  ++    QL    
Sbjct: 63  QRQVLIAYHAPKSRLIPDIRKVFNDHSAQFKNEINNLTLLVQKQNNLSSL--ISQLSNSF 120

Query: 127 LHFQQLAQSILKLQQLQLSKTAQISEQAKQFRYGLSSIGPEMGRIASFLAVDNPEAMDAA 186
             F++ + ++L  ++  LSK  Q+    K+           +  I       NP+A   A
Sbjct: 121 STFERDSLAMLSEREAALSKQEQLISLKKKLENAADDASSVLLDIIDLENSQNPDAQSIA 180

Query: 187 NRFTASASAMESAF--LLLFIEEEMSAAQKYRQELKNRVAGLELAFDDFKEWYPEIKDYA 244
               ASASA+++    ++  I + +S  +  + EL ++   L+    + K     +  +A
Sbjct: 181 ----ASASAIDTGMGNIITTIADLVSNDEMSKHELISKE--LDYILSETKNKLEYVNRHA 234

Query: 245 ----------SLTAPYEMVLAGFQ-AQAVIEQIINKLEDAQQQNKDFASAAEVAQQLVTQ 293
                     S+    + VL   + + ++++Q  N+L  AQ  +   A   +  + +   
Sbjct: 235 EGIVDADTLESINQDVKKVLTLLEGSDSMVQQKANQLNHAQAASNQLAIIEKDVKVIDRN 294

Query: 294 LNQWSTLAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNIT 353
           + + S   +    Q  Q   + I A +    I   + ++  + + F +   + R+LN + 
Sbjct: 295 MEEVSDNIEAVAAQMSQATITQIDAASFRTMIVVLIAIVVAIIISFAVVTPLKRSLNQVN 354

Query: 354 RHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHG 413
             L  L    L H+LD     +F  +A   N+++ S    +A +      L   AE +  
Sbjct: 355 NALNVLASGNLTHKLDDSSQDEFAELAKNCNRLVDSLRGLIAGILDRSNQLAAAAEQTSA 414

Query: 414 SAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQ 473
              Q+   +  Q   +  +A    +L +S ++++  ++D+     +A + +     + E+
Sbjct: 415 ITAQTTTGIQEQKSQVDQVATATTELSSSAQQVSMSANDALAQIKQADQEAKHMRAIAEE 474

Query: 474 NQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQ 533
           N+  + AL   +A     +++++    +I  ++D+I GIA+ TNLLALNAAIEAARAGEQ
Sbjct: 475 NKHTILALAEEVAKAGQVINKVHSDSAAIGSILDVIRGIAEQTNLLALNAAIEAARAGEQ 534

Query: 534 GRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEV 593
           GRGFAVVADEVR LAS T   T  I+ M+  L   A ++  A+D  R +    +Q +E+ 
Sbjct: 535 GRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQANACVQKTEQA 594

Query: 594 KSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESA 653
                 I ++V         I  A +EQ   +  V++ +  I+   +ET    D   +S+
Sbjct: 595 NLALETISQSVHKAYDAGTHIAHAAQEQNLVSQQVSEKLEHIAAISEETAIGADQTAQSS 654

Query: 654 EQVAEIAGHQQAMLHKYEL 672
            QVA++A   QA + ++ +
Sbjct: 655 HQVAKLAEELQASVGEFRV 673