Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (359), Expect = 3e-38
 Identities = 99/364 (27%), Positives = 178/364 (48%), Gaps = 2/364 (0%)

Query: 311 EVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHK--LNHRL 368
           +V  ++  V +   I   L+ + I A +  L   I   LN+    L  + Q +  L+ RL
Sbjct: 182 DVKESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRL 241

Query: 369 DLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQA 428
              G  +  ++A   N       + +  +    ++L   A+L   + E+SNQS    ++ 
Sbjct: 242 STQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRE 301

Query: 429 LLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAVN 488
             ++A  +NQ+ ++  E+A  +  +   +      + Q   VI+   +  + L   L  +
Sbjct: 302 TGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKAS 361

Query: 489 DAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLA 548
           +A   +L Q    I  ++D+I  IA+ TNLLALNAAIEAARAG  GRGFAVVADEVR LA
Sbjct: 362 EAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALA 421

Query: 549 SDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIR 608
           + T   T  I+ +++E+ T      Q+  +++++       ++E       I   +AHI 
Sbjct: 422 NRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHIS 481

Query: 609 TRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLH 668
               Q+  ATEEQ   T ++N+ +  ISE  + + +  ++   +A+ + +I+      L 
Sbjct: 482 DMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTLG 541

Query: 669 KYEL 672
           ++++
Sbjct: 542 QFKI 545