Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  133 bits (335), Expect = 2e-35
 Identities = 95/379 (25%), Positives = 178/379 (46%), Gaps = 13/379 (3%)

Query: 298 STLAQQHIVQ----GKQEVTSTISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNIT 353
           S L++Q+++       +E+ + ++   L       +L+  +    + +  ++G AL    
Sbjct: 126 SALSEQNLLTIITVDNREINTLLADDNLLIYSVMAVLLFVLFLFSYYISTFVGGALYTTV 185

Query: 354 RHLAQLTQHKLNHRLDLVGPQD-FQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSH 412
             L +     L  RL+    +D F  +A  ++ ++   H  +  +  +   + +      
Sbjct: 186 MALKRAASGDLTGRLNFFEVKDEFSLLAISIDTLVERQHNLVKQIAESTFKIREVVSSFR 245

Query: 413 GSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIE 472
            +A+Q       Q Q L ++A  + ++ A+++E+A  +  S  ++ EA +    G K IE
Sbjct: 246 NTAQQGQALAVNQRQHLDSLATAMEEMTAAVKEVARNAEQSCAETQEANQQVNAGSKDIE 305

Query: 473 QNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGE 532
                +  L   ++    A++ LN + + I E+V  I+ I+  TNLLALNAAIEAARAGE
Sbjct: 306 TTVSAIDVLSDEISAASNAVNTLNDKASKIDEVVSTINAISQQTNLLALNAAIEAARAGE 365

Query: 533 QGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEE 592
           QGRGFAVVADEVR LA  T   T  I+ M+  L        Q +  +  +   A +  + 
Sbjct: 366 QGRGFAVVADEVRTLAGRTQAATVEIKSMIESLQQGTRNLTQVMSRTVSQ---ASEGKQH 422

Query: 593 VKSTFMQIERAVAHIRTRVEQ----ITQATEEQKRATADVNKAVAQISEQGQETKRQLDA 648
           V  T   ++ ++AH  +RV +    I  + EEQ     ++   + +I  Q  + ++  + 
Sbjct: 423 VLKTGKDLQ-SIAHHSSRVFEMSVLIATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQ 481

Query: 649 MLESAEQVAEIAGHQQAML 667
            +   +++   AG    ++
Sbjct: 482 SVSGCDELQATAGQLDQLM 500



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 26/190 (13%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 483 TTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVAD 542
           T +A+  AA  +L  R+            + D  +LLA++                 + +
Sbjct: 184 TVMALKRAASGDLTGRLNFFE--------VKDEFSLLAIS--------------IDTLVE 221

Query: 543 EVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIER 602
               L    ++ T  IR++++     A + +      R+ + +   + EE+ +   ++ R
Sbjct: 222 RQHNLVKQIAESTFKIREVVSSFRNTAQQGQALAVNQRQHLDSLATAMEEMTAAVKEVAR 281

Query: 603 AVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGH 662
                    ++  Q      +       A+  +S++       ++ + + A ++ E+   
Sbjct: 282 NAEQSCAETQEANQQVNAGSKDIETTVSAIDVLSDEISAASNAVNTLNDKASKIDEVVST 341

Query: 663 QQAMLHKYEL 672
             A+  +  L
Sbjct: 342 INAISQQTNL 351