Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  157 bits (396), Expect = 2e-42
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 15/376 (3%)

Query: 306 VQGKQEVTST-------ISAVTLTQQISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQ 358
           V  KQE+ S        +SAV +   +   L+++AI  + F     +  ALN+I      
Sbjct: 261 VMNKQEIMSQATSLAWWMSAVGVGLLVIFGLVLVAIFKMQFKDLERVALALNDIAEGDGD 320

Query: 359 LTQ--HKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAE 416
           LT   H  N   D +G      +A+  N+ +   H  ++ +      L   A+ S  SA 
Sbjct: 321 LTVRIHTANSH-DEIGI-----LASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASAA 374

Query: 417 QSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQ 476
            ++Q +  Q   +  +A  + ++ ++  EIA  +  +   +  A   S  G K + Q+QQ
Sbjct: 375 DNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQ 434

Query: 477 RLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRG 536
            ++ L   +      +SELN+    I  ++  ISGIA+ TNLLALNAAIEAARAGEQGRG
Sbjct: 435 SIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRG 494

Query: 537 FAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKST 596
           FAVVADEVR L+  T   T  I+ M+  L   A K+ +++ +S     T++  +     +
Sbjct: 495 FAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASES 554

Query: 597 FMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQV 656
            +QI +A+  I     QI  A EEQ   T+++N+    I E  +    +  + +  ++++
Sbjct: 555 LLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSAMVQSQEL 614

Query: 657 AEIAGHQQAMLHKYEL 672
           A +A   Q  + +++L
Sbjct: 615 AHLAASLQQEVSRFKL 630



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 42/210 (20%), Positives = 83/210 (39%), Gaps = 50/210 (23%)

Query: 273 AQQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIVQGKQEVTSTISAVT-LTQQISGTLLV 331
           +QQ  ++ A+  + A +++++LN+ S           Q++ S +  ++ + +Q +   L 
Sbjct: 432 SQQSIRNLANEVDTAGRIISELNEHS-----------QKINSILLTISGIAEQTNLLALN 480

Query: 332 LAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTH 391
            AI A   G +   GR                            F  VA ++  +   TH
Sbjct: 481 AAIEAARAGEQ---GRG---------------------------FAVVADEVRVLSQRTH 510

Query: 392 ESLALVTRNCETLYQTA-------ELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIR 444
            S   +    ETL QTA         SH  AE S     + +++LL ++  IN++     
Sbjct: 511 SSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMAS 570

Query: 445 EIAGVSHDSYTDSVEAAEHSAQGVKVIEQN 474
           +IA  + +  T        + + ++ + +N
Sbjct: 571 QIATAAEEQ-TSVTSEINRNTESIREVSEN 599