Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  132 bits (332), Expect = 4e-35
 Identities = 90/312 (28%), Positives = 148/312 (47%), Gaps = 12/312 (3%)

Query: 349 LNNITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTA 408
           LN+I +    LT+     RL + G  +   +    N  +      +  V      +   A
Sbjct: 236 LNDIAKGEGDLTK-----RLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAA 290

Query: 409 ELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGV 468
              H   +  +  L + N     +   I ++ ++  E+A  +      +  A    A   
Sbjct: 291 NAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQ 350

Query: 469 KVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAA 528
           + ++ + + + AL   +     ++  L+++   I  ++ +I GIA+ TNLLALNAAIEAA
Sbjct: 351 RCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAA 410

Query: 529 RAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQ 588
           RAGEQGRGFAVVADEVR LAS T   T  I +M++ L    S++ + +DES++  V +++
Sbjct: 411 RAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVE 470

Query: 589 SSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDA 648
           SS  +  +   +  AV  I     QI  A  EQ   T ++N+ V  I E   E       
Sbjct: 471 SSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNE------- 523

Query: 649 MLESAEQVAEIA 660
           +L S+E  A ++
Sbjct: 524 LLHSSEHAARVS 535