Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  146 bits (369), Expect = 2e-39
 Identities = 128/446 (28%), Positives = 209/446 (46%), Gaps = 60/446 (13%)

Query: 260 QAVIEQIINKLEDAQQQNKDFASA-AEVAQQLVTQLNQWSTLAQQHIVQGKQ-----EVT 313
           Q  + Q++ +L +    N DF    A   + L+ Q+ Q+  L QQ +   KQ     E+T
Sbjct: 79  QRNVRQLVEQLAEF---NTDFMGQDARTIRTLLPQIEQYVRLYQQELAFAKQTGTEPELT 135

Query: 314 STISAV-------------TLTQQ------------------ISGTLLVLAILAVWFGLR 342
           S   A+              +TQ+                  + G +LV  + ++   L 
Sbjct: 136 SERGALGPKVSNEINQLVKLITQRNHELGKQAEDKVNATEALLLGLILVAIVASLLSAL- 194

Query: 343 RWIGRALNNITRHLAQLTQH----KLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVT 398
            ++ R L NI   + ++ +H     L  +  + G  +   + A L++VI      ++ + 
Sbjct: 195 -FMSRRLVNIVHQIKRVVEHLADGDLTQKTQISGQNELCALGADLDRVIDHLRHMISDIA 253

Query: 399 RNCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSV 458
                  Q +E       Q N    A   AL T A   +Q+  ++ E++  +H+   D+ 
Sbjct: 254 -------QASEHMSDQIGQLNVQSNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAA 306

Query: 459 EAAEHSAQGVKVIEQNQQRL-QALETTLA----VNDAA--MSELNQRVTSIREMVDMISG 511
            AA  + Q  +  +++++ + QA  T +A    V+ AA  ++E+N+    I  ++D+I  
Sbjct: 307 SAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGD 366

Query: 512 IADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASK 571
           IAD TNLLALNAAIEAARAGEQGRGFAVVADEVR LA+ T   T  I  M+  L T A+ 
Sbjct: 367 IADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTAEINQMLERLRTGANS 426

Query: 572 SRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKA 631
           +  A+DE+++    A  ++  V  +   +   V  I     QI  A EEQ   + ++N+ 
Sbjct: 427 AVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDINGLSNQIATAAEEQSAVSEEINRN 486

Query: 632 VAQISEQGQETKRQLDAMLESAEQVA 657
           +  I E  +E  +   A L SA  +A
Sbjct: 487 LNTIREMVEELNQSGKATLNSATSLA 512



 Score = 41.6 bits (96), Expect = 9e-08
 Identities = 68/335 (20%), Positives = 130/335 (38%), Gaps = 40/335 (11%)

Query: 304 HIVQGKQEVTSTISAVTLTQ--QISGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQ 361
           +IV   + V   ++   LTQ  QISG   + A+ A    L R I   L ++   +AQ ++
Sbjct: 202 NIVHQIKRVVEHLADGDLTQKTQISGQNELCALGA---DLDRVIDH-LRHMISDIAQASE 257

Query: 362 HKLNHRLDLVGPQDFQNV------AAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSA 415
           H ++ ++  +  Q   N       A + +QV+ +  E  A            A  +  + 
Sbjct: 258 H-MSDQIGQLNVQSNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQAN 316

Query: 416 EQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDS---------------------Y 454
           EQ+++S  A  QA  T+ A + ++D +   IA ++ ++                      
Sbjct: 317 EQADKSKKAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDIADQTNLLAL 376

Query: 455 TDSVEAAEHSAQGVK-VIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIA 513
             ++EAA    QG    +  ++ R  A  T      A+ +E+NQ +  +R   +      
Sbjct: 377 NAAIEAARAGEQGRGFAVVADEVRALAART-----QASTAEINQMLERLRTGANSAVNAM 431

Query: 514 DSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSR 573
           D T     +AA       E          ++  L++  +        +  E+    +  R
Sbjct: 432 DETKQSCQDAADTTTLVTESLETLTTYVFDINGLSNQIATAAEEQSAVSEEINRNLNTIR 491

Query: 574 QAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIR 608
           + V+E  +     L S+  + +T  Q+   V+H R
Sbjct: 492 EMVEELNQSGKATLNSATSLAATKEQLTGVVSHFR 526