Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  144 bits (364), Expect = 1e-38
 Identities = 107/402 (26%), Positives = 202/402 (50%), Gaps = 5/402 (1%)

Query: 274 QQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIVQGKQEVTSTISAVTLTQQISGTLLVLA 333
           QQQN +   A   A+  + +L  +       +++   +   T +       ++ T++++ 
Sbjct: 266 QQQNPEDWFAKSTAR--IDRLRDFEQQVSADLLKTTTDRLFTANKHMFFVLVTLTVVLVL 323

Query: 334 ILAVWFGLRRWIGRALNNITRHLAQLTQH-KLNHRLDLVGPQDFQNVAAQLNQVIVSTHE 392
           +L +   + R++  +++++   + +  +H  L+ RL      +F  +A   N ++     
Sbjct: 324 VLLLSLSVIRYLHDSVHHVYSTVTKARKHYDLSVRLTQNSSDEFGELAIAFNDMMNDFES 383

Query: 393 SLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHD 452
            +  V  +   L Q  E          Q + A +     +A+ + ++ A++ EIA  + +
Sbjct: 384 VILQVRASASKLQQAVEQMDVCTHAMEQDVMAGHSEAEQVASAMTEMSATVAEIASNAVN 443

Query: 453 SYTDSVEAAEHSAQGVKV-IEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISG 511
           + +++  AA H A+   + + +    ++AL   +     A++EL++ +  I  ++D+ISG
Sbjct: 444 A-SEASTAANHEAKAGNIEVGRTSAAIKALANDIDGASKAINELDREIHGIVVVLDVISG 502

Query: 512 IADSTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASK 571
           IA+ TNLLALNAAIEAARAGE GRGFAVVADEVR LA  +   T++I++M + L + AS 
Sbjct: 503 IAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRSQTSTSDIKNMTDRLKSGASI 562

Query: 572 SRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKA 631
           + +A++    +   ++  +E+      +I   V  I    EQI  AT EQ   + DVN+ 
Sbjct: 563 AVKAMERGLMQANNSVHEAEQAGIELKRIVEQVDIIDRMNEQIATATHEQSAVSEDVNRN 622

Query: 632 VAQISEQGQETKRQLDAMLESAEQVAEIAGHQQAMLHKYELN 673
             +ISE    T+R  D + E  + +   A      ++K+ +N
Sbjct: 623 ALKISEIYLNTQRISDELRELTKALTYDAALMSKEVNKFHVN 664