Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  159 bits (402), Expect = 4e-43
 Identities = 111/376 (29%), Positives = 185/376 (49%), Gaps = 15/376 (3%)

Query: 306 VQGKQEVTSTISAVTLTQQISGT-------LLVLAILAVWFGLRRWIGRALNNITRHLAQ 358
           V  K E+ S  + +       G        L+++AI  + F     +  ALN+I      
Sbjct: 261 VMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVLVAIFKIQFKDLERVALALNDIAEGDGD 320

Query: 359 LTQ--HKLNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAE 416
           LT   H  N   D +G      +A+  N+ +   H  ++ + +    L   A+ S  SA 
Sbjct: 321 LTVRIHTANSH-DEIGI-----LASGFNRFVERLHGMISRMHKIAGQLEYQAQGSSASAT 374

Query: 417 QSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQ 476
            ++Q +A Q   +  +A  + ++ ++  EIA  +  +   + +A   S  G K + Q+QQ
Sbjct: 375 DNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQDAVGLSNHGQKQVMQSQQ 434

Query: 477 RLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRG 536
            ++ L   +      +SELN+    I  ++  ISGIA+ TNLLALNAAIEAARAGEQGRG
Sbjct: 435 SIRNLANEVETAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRG 494

Query: 537 FAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKST 596
           FAVVADEVR L+  T   T  I+ M+  L   A K+ +++ +S     T++  +     +
Sbjct: 495 FAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASES 554

Query: 597 FMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQV 656
            +QI +A+  I     QI  A EEQ   T+++N+    I E  +    +  + +  A+++
Sbjct: 555 LLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSSMVQAQEL 614

Query: 657 AEIAGHQQAMLHKYEL 672
           A +A   Q  + +++L
Sbjct: 615 AHLAASLQQEVGRFKL 630



 Score = 32.0 bits (71), Expect = 9e-05
 Identities = 43/197 (21%), Positives = 94/197 (47%), Gaps = 22/197 (11%)

Query: 273 AQQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIVQGKQEVTSTISAVT-LTQQISGTLLV 331
           +QQ  ++ A+  E A +++++LN+ S           Q++ S +  ++ + +Q +   L 
Sbjct: 432 SQQSIRNLANEVETAGRIISELNEHS-----------QKINSILLTISGIAEQTNLLALN 480

Query: 332 LAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQVIVSTH 391
            AI A   G +      + +  R L+Q T         ++  +  Q  A +  + +  +H
Sbjct: 481 AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMI--ETLQQTAGKAVKSMTQSH 538

Query: 392 E----SLALVTRNCETLYQTAELSHGSAEQSNQ-SLAAQNQALLTMAATINQLDASIREI 446
           +    S+A      E+L Q ++  +  ++ ++Q + AA+ Q  +T  + IN+   SIRE+
Sbjct: 539 DMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVT--SEINRNTESIREV 596

Query: 447 A-GVSHDSYTDSVEAAE 462
           +  +S ++ +  V+A E
Sbjct: 597 SENLSIEAQSSMVQAQE 613