Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  129 bits (324), Expect = 3e-34
 Identities = 84/265 (31%), Positives = 134/265 (50%), Gaps = 3/265 (1%)

Query: 400 NCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIREIAGVSHDSYTDSVE 459
           +C+ + Q A++S    E+   +  +Q   +  +A  + Q+ A++ +++    D+ + S  
Sbjct: 247 SCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADAASASQM 306

Query: 460 AAEHSAQGVKVIEQNQQRLQALETTLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLL 519
           A+  +  G K +    Q +QA+   L      ++EL      I  ++D+I GIA+ TNLL
Sbjct: 307 ASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIAEQTNLL 366

Query: 520 ALNAAIEAARAGEQGRGFAVVADEVRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDES 579
           ALNAAIEAARAGEQGRGFAVVADEVR LA  T   T  I  M+N L     K+ +++ E 
Sbjct: 367 ALNAAIEAARAGEQGRGFAVVADEVRALAQRTHDATKEIHTMINLLQQGTHKAVRSMQEG 426

Query: 580 RKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQKRATADVNKAVAQISEQG 639
                  + +++   +    I  A+  I      I  A EEQ     ++N++V  +S Q 
Sbjct: 427 VDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVVNVS-QF 485

Query: 640 QETKRQLDAMLESA--EQVAEIAGH 662
             +  QL   + S   E + E+  H
Sbjct: 486 THSSHQLGCEMVSLNDEVIGEMNSH 510



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 563 NELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERAVAHIRTRVEQITQATEEQK 622
           +EL +   ++R + D   ++   +    EE++ T       +  + T ++Q+T    +  
Sbjct: 235 SELKSVLGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMS 294

Query: 623 RATADVNKAVAQISEQG-----------QETKRQLDAMLESAEQVAEIAGHQQ 664
              AD   A    S Q            Q  +     + E+++ + E+ GH +
Sbjct: 295 SNCADAASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSR 347