Pairwise Alignments

Query, 673 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  145 bits (366), Expect = 6e-39
 Identities = 92/309 (29%), Positives = 157/309 (50%)

Query: 364 LNHRLDLVGPQDFQNVAAQLNQVIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLA 423
           L  RL + G  +   +A   N  I    +S+  V +  E L  +A+     A+Q+ +   
Sbjct: 330 LRQRLPVKGEDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSH 389

Query: 424 AQNQALLTMAATINQLDASIREIAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALET 483
            Q    + +   IN++ A++ EIA  +  +   + +A   S  G  V+ + +  +  L  
Sbjct: 390 EQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQ 449

Query: 484 TLAVNDAAMSELNQRVTSIREMVDMISGIADSTNLLALNAAIEAARAGEQGRGFAVVADE 543
            +      +  L     SI  ++D+I  I++ TNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 450 DVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADE 509

Query: 544 VRKLASDTSKQTTNIRDMMNELVTAASKSRQAVDESRKEMVTALQSSEEVKSTFMQIERA 603
           VR LAS T+  T  ++ M+++L + AS++  A+ +SR      + + +E   + + I   
Sbjct: 510 VRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQSRARSHEGVAAVDEASQSLVGISDR 569

Query: 604 VAHIRTRVEQITQATEEQKRATADVNKAVAQISEQGQETKRQLDAMLESAEQVAEIAGHQ 663
           +  I     Q+  ATEEQ     D+N+ V +I+E  Q T     A  +++  + ++A   
Sbjct: 570 IGLISDMNIQVAAATEEQSTVVEDINRNVTEINEITQRTASTAQAAAQASLALNQLAHRL 629

Query: 664 QAMLHKYEL 672
             ++ K+++
Sbjct: 630 DTLVAKFKV 638



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 62/333 (18%), Positives = 120/333 (36%), Gaps = 50/333 (15%)

Query: 206 EEEMSAAQKYRQELKNRVAGLELAFDDFKEWYPEIKDYASLTAPYEMVLAGFQAQAVIEQ 265
           E E    Q+   + ++ +A L   F+ F     +I+D     A     L GF A+ V  Q
Sbjct: 325 EGEGDLRQRLPVKGEDEIAQLAQGFNSF---ISKIQDSVIEVAQTSEQL-GFSAKDVSNQ 380

Query: 266 IINKLEDAQQQNKDFASAAEVAQQLVTQLNQWSTLAQQHIVQGKQEVTSTISAVTLTQQI 325
               LED+ +Q            ++   +N+ ++ A Q  V  K   T + S   +  + 
Sbjct: 381 AQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRA 440

Query: 326 SGTLLVLAILAVWFGLRRWIGRALNNITRHLAQLTQHKLNHRLDLVGPQDFQNVAAQLNQ 385
             T+  L+           +G  + ++  H        +   LD++     Q     LN 
Sbjct: 441 RDTINQLSQDV------EQVGEVIESLATH-----TKSIGGILDVIRAISEQTNLLALNA 489

Query: 386 VIVSTHESLALVTRNCETLYQTAELSHGSAEQSNQSLAAQNQALLTMAATINQLDASIRE 445
            I +                +  E   G A  +++    +N A  T A+T N++   I +
Sbjct: 490 AIEAA---------------RAGEAGRGFAVVADE---VRNLASRTAAST-NEVQGMIDK 530

Query: 446 IAGVSHDSYTDSVEAAEHSAQGVKVIEQNQQRLQALETTLAV--------------NDAA 491
           +   +  +     ++   S +GV  +++  Q L  +   + +                  
Sbjct: 531 LQSEASRAVNAMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTV 590

Query: 492 MSELNQRVTSIREMVDMISGIADST--NLLALN 522
           + ++N+ VT I E+    +  A +     LALN
Sbjct: 591 VEDINRNVTEINEITQRTASTAQAAAQASLALN 623



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 43/212 (20%), Positives = 81/212 (38%), Gaps = 20/212 (9%)

Query: 87  NEWQKLDAQAGDEITRLQQNVQLLSSAEAVQQAEQLQREILHFQQLAQSILKLQQLQLSK 146
           N  Q +  +A D I +L Q+V+ +   E ++      + I     + ++I +   L    
Sbjct: 431 NSGQVVVTRARDTINQLSQDVEQVG--EVIESLATHTKSIGGILDVIRAISEQTNLLALN 488

Query: 147 TAQISEQAKQFRYGLSSIGPEMGRIASFLAVDNPEAMDAANRFTASASAMESAFLLLFIE 206
            A  + +A +   G + +  E+  +AS  A    E     ++  + AS            
Sbjct: 489 AAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEAS------------ 536

Query: 207 EEMSAAQKYRQELKNRVAGLELAFDDFKEWYPEIKDYASLTAPYEMVLAGF--QAQAVIE 264
             ++A  + R      VA    A D+  +    I D   L +   + +A    +   V+E
Sbjct: 537 RAVNAMAQSRARSHEGVA----AVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVE 592

Query: 265 QIINKLEDAQQQNKDFASAAEVAQQLVTQLNQ 296
            I   + +  +  +  AS A+ A Q    LNQ
Sbjct: 593 DINRNVTEINEITQRTASTAQAAAQASLALNQ 624