Pairwise Alignments

Query, 240 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  172 bits (435), Expect = 7e-48
 Identities = 84/219 (38%), Positives = 141/219 (64%), Gaps = 7/219 (3%)

Query: 3   IKLTAQQLSMRFKDRVLFHIPEIAIGPNDAIYLKGDNGVGKTTLLKILAGLLEPSNGRV- 61
           +K+ A  + MRF  R+L+    +++  +  I+L+GDNG GKTTL+K+LAGL  PS+G + 
Sbjct: 2   VKIIANNIEMRFGSRLLYRFDRLSLAQHQTIHLQGDNGSGKTTLMKMLAGLQAPSSGEIH 61

Query: 62  ---LGRKPWWQRLFLTSATSEVVYLHQSPYLFDDTVYQNVVYGIRFSGLSAHEKRAQVIT 118
                  PWW+R        + VYLHQ PYLFD +V  N+ Y      ++  E  ++  T
Sbjct: 62  TEGFAPNPWWRR---NPLLGKAVYLHQHPYLFDGSVAYNLNYVQPLCDMTEQEIASRTQT 118

Query: 119 ALRMVGLETLADEHISVLSGGEKQRVAMARAWILKPSILLMDEPSASLDQESIERLVIMA 178
           A+ M  L +L ++  + LSGGE+QR+A+ARAWI++P +L++DEP++++D+ S + ++ M 
Sbjct: 119 AIEMAQLGSLLNQRAASLSGGERQRLAIARAWIMRPRLLMLDEPTSNMDKLSQQLVLTMV 178

Query: 179 RDLLERGSSLVITSHQTNALTALCKKQWWIKERQLIESP 217
             L ++G+ ++I+SHQ+ +LT LC++ W I+ + +  SP
Sbjct: 179 SHLKQQGTGMLISSHQSCSLTGLCEQTWQIQAQAIQVSP 217