Pairwise Alignments

Query, 232 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  266 bits (679), Expect = 3e-76
 Identities = 137/222 (61%), Positives = 172/222 (77%), Gaps = 8/222 (3%)

Query: 10  ALHLLVSLDPKLWEIVAVSFSVSLTAIALVLIPSVVLSFVLAYTNFRGKWTLLSLINTLQ 69
           AL LL SLDP +W I++VSFSVS  A+ + L+PS+VL FVLA+ +F GKW + +L+ TLQ
Sbjct: 12  ALSLLFSLDPDVWSIISVSFSVSFAALLITLVPSMVLGFVLAFAHFPGKWFVTNLVQTLQ 71

Query: 70  AVPTVVIGLLLYMLLSRAGPLGDWQMLFTQQAMILGQALICFPILVAMMHGALQSTDRRS 129
           ++PTVVIGLL+Y++L+R GPLGD + LFTQ+ MILGQ LIC P+++AM   A  S DRR+
Sbjct: 72  SIPTVVIGLLVYLILTRNGPLGDLKWLFTQEGMILGQMLICAPVMIAMSQAAFTSVDRRA 131

Query: 130 LETSMTLGASVPRLFATLVW----EARFPLMAATIAGFSRIVTEVGCSMMVGGNIMGLTR 185
            ETS TLGAS    +A  VW    E R PL+ A +A FSRI+TEVGCSMMVGGNI+ +TR
Sbjct: 132 WETSRTLGAS----WAGAVWAVCRELRMPLLLAIVAAFSRILTEVGCSMMVGGNILNVTR 187

Query: 186 NIPTAISLESNKGAFAQGVALGMVLLALALGLNFLLSSLRGK 227
           NIPTAI+LE++KG FAQ +ALG+VLL LAL LNF L SLRGK
Sbjct: 188 NIPTAIALETSKGDFAQAIALGLVLLILALILNFALGSLRGK 229