Pairwise Alignments

Query, 232 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 283 a.a., sulfate ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 15/221 (6%)

Query: 18  DPKLWEIVAVSFSVSLTAIALVLIPSVVLSFVLAYTNFRGKWTLLSLINTLQAVPTVVIG 77
           DP     + ++  V +  +    I  V +++ +A   FRGK  L+S+I+   A+  VV+G
Sbjct: 59  DPDALAAIRLTLLVLIIVVPTNAIFGVAIAWAIAKFEFRGKTLLISIIDMPFAISPVVVG 118

Query: 78  LLLYMLLSRAGPLGDW------QMLFTQQAMILGQALICFPILVAMMHGALQSTDRRSLE 131
           L+  +L    G  G W      +++F    +I+       P +   +   +Q   +   E
Sbjct: 119 LIFVILFGAQGWFGPWLAAHDLKVIFAVPGIIIVIMFGTLPFVARELIPLMQQQGKDEEE 178

Query: 132 TSMTLGASVPRLFATLVWEARFP-----LMAATIAGFSRIVTEVGCSMMVGGNIMGLTRN 186
            S+TLGA+  + F    W    P     L+   I   +R + E G   +V G I G T  
Sbjct: 179 ASLTLGANGLKTF----WYVTLPNIKWGLLYGVILCNARAMGEFGAVAVVSGRIRGETNT 234

Query: 187 IPTAISLESNKGAFAQGVALGMVLLALALGLNFLLSSLRGK 227
           +P  I +  N+  F    A+  +L  LAL    L S +  K
Sbjct: 235 MPLHIEVLYNEYMFTAAFAVSSLLTGLALVTIVLKSMVEWK 275