Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Pseudomonas fluorescens FW300-N2E2

 Score =  272 bits (695), Expect = 2e-77
 Identities = 171/469 (36%), Positives = 258/469 (55%), Gaps = 35/469 (7%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           SVL+V+D+  + L  K+AL+          S EEA     ++   ++I DI LPG  G+E
Sbjct: 6   SVLIVEDDPHVLLGCKQALTLEDIPCIGVGSAEEALERVDDNFAGIVISDIRLPGIDGLE 65

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
                   D    V+ +TG  D+  A+ A++ GA DF+ KPF+ E+++   +R + +R  
Sbjct: 66  LLTRLKARDRSLPVVLITGHGDISMAVGAMQKGAYDFMEKPFSPERLVDVARRALEQRSL 125

Query: 137 ERLQYALQRDFQRHCTTQ--IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
            R   +L+R      + +  IIG S   + L+  I   A + A+VLIEGE+GTGKELVAR
Sbjct: 126 AREVSSLRRQLAERDSLEGRIIGRSPAMQHLRALIANVADTSANVLIEGETGTGKELVAR 185

Query: 195 GIHEASGRQGP-FVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +H+ S R    FV +NCG +   L ESE+FGH + AFTGA K R G    A+GGTLFLD
Sbjct: 186 CLHDFSRRHDKQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHADGGTLFLD 245

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           E+  MPL +Q  LLRVL++R +  +GS + V VD RV+AAT  +L +    G+FR DLYY
Sbjct: 246 EVESMPLPLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDEMGRTGQFRSDLYY 305

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLNV+ +E+ PLRER++D+ +L   F +         +P+   + +S++  +DWPGN+RE
Sbjct: 306 RLNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRTVPELDNQTLSNLMSHDWPGNVRE 365

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           L+N+ ER  L             GLP +     + +   N  ++  + V           
Sbjct: 366 LRNVAERYAL-------------GLPAFKR---SGASGGNQGLAFAEAV----------- 398

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWESEDLSH 482
              A E+  +   +    GN + A+++LG+A+ TL  K K++    LSH
Sbjct: 399 --EAFERNLLVDALQRSGGNLTQASQELGMAKTTLFDKVKKY---GLSH 442