Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Nitrogen regulation protein NR(I) from Pseudomonas fluorescens FW300-N2E2

 Score =  265 bits (678), Expect = 2e-75
 Identities = 153/379 (40%), Positives = 225/379 (59%), Gaps = 8/379 (2%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           SV++VDDE  ++  +++ LS    +V L +  +E      EH   +++ D+ +PG SG+E
Sbjct: 4   SVMVVDDEGSIRSAVEQWLSLSGFQVQLFARADECLARLPEHFPGVILSDVRMPGLSGLE 63

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRL- 135
                   D    VI +TG  D+  A+ A++ GA DF+ KPF+ E +L +++R ++KR  
Sbjct: 64  LLAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTL 123

Query: 136 ---NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELV 192
              N RL    Q D +      ++G S   + L+++++  A    +VLI GE+G+GKELV
Sbjct: 124 VLENRRLHE--QADARARLDGTLLGVSRALQNLRRQVLDLAALPVNVLIRGETGSGKELV 181

Query: 193 ARGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLF 251
           AR +H+   R   PFV +NC AI   L E+ELFGH SGAFTGA+  R G    ANGGTLF
Sbjct: 182 ARCLHDFGTRASMPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYANGGTLF 241

Query: 252 LDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDL 311
           LDEI  MPL  Q  LLRVL+++ +  +GS + + VD+R++AAT  +L  E   GRFR DL
Sbjct: 242 LDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIQVDLRIIAATKPDLLDEARAGRFREDL 301

Query: 312 YYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNI 371
            YRLN+ ++ + PLRER++D+  L   FT      LG      +   +S +  +DWPGN+
Sbjct: 302 AYRLNIAELRLPPLRERREDIPLLFEHFTHSAAERLGRAAAPLSGPQLSHLLSHDWPGNV 361

Query: 372 RELKNLIERCLL-LGKPPA 389
           REL N+ ER +L L +P A
Sbjct: 362 RELANVAERQVLGLDQPQA 380