Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., Two-component sensor CbrB: intrcellular carbon:nitrogen balance from Pseudomonas fluorescens FW300-N2E2

 Score =  274 bits (701), Expect = 4e-78
 Identities = 176/471 (37%), Positives = 269/471 (57%), Gaps = 26/471 (5%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+V+DE  ++  L++ L +   +V  A S++EA+       +DL++ D+ LPG  G E 
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTEL 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +          V+ MT +A L +A+ ++K+GA D+I KPF+ ++MLQAV R +  R   
Sbjct: 64  IKL----GQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQAA 119

Query: 138 RLQYALQRDFQRHCTTQ----------IIGSSVQTELLKQRIVQFAPSRASVLIEGESGT 187
               A         T            IIGS    + L  +I + AP+ ++VLI+GESGT
Sbjct: 120 TSNPAEPAGKASASTKAGASNNNGEIGIIGSCPPMQDLYSKIRKVAPTDSNVLIQGESGT 179

Query: 188 GKELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVAN 246
           GKELVAR +H  S R + P + +NC AI   L+ESELFGH  GAFTGA   R GL   A+
Sbjct: 180 GKELVARALHNLSRRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAAD 239

Query: 247 GGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGR 306
           GGTLFLDEIGE+PL  QA LLRVL++  +R VGS +   VDVR++AAT+R+L+   + G+
Sbjct: 240 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQ 299

Query: 307 FRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYD 366
           FR DLYYRL+V+ +++  LRER  D++E+   F     A +     K+A +   +++ Y 
Sbjct: 300 FREDLYYRLHVIALKLPALRERGADVNEIAQAFLARQSARVNRTDLKFAPDAEQAIRHYA 359

Query: 367 WPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSE-ISLGDNVTQP 425
           WPGN+REL+N +ER ++L + P     +L G+      ++ +S  ++ E I L       
Sbjct: 360 WPGNVRELENAVERAVILCESP-EISADLLGI------DIELSDLDDEEFIGLAPQQGGA 412

Query: 426 SLGYPNDWPLSAVEKAHIQQIVALHEGN--KSAAARDLGVARKTL-ERKYK 473
           +    ++       + + Q  V  H+ +  ++  AR LGV+RK L ER+ +
Sbjct: 413 ANNTSHEPTEDLSLEDYFQHFVLEHQDHMTETELARKLGVSRKCLWERRQR 463