Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Type IV fimbriae expression regulatory protein PilR from Pseudomonas fluorescens FW300-N2E2

 Score =  275 bits (703), Expect = 2e-78
 Identities = 167/458 (36%), Positives = 262/458 (57%), Gaps = 23/458 (5%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDDE  ++ +L   L +       A ++ EA+ L     +DL + D+ LP  +G+E 
Sbjct: 9   ILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQNLLAGEAFDLCLTDMRLPDGTGLEL 68

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +       +  V  +T +  LETAI ALK GA DF+ KP +L ++ + V   +      
Sbjct: 69  VQHIQQRYPQLPVAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVA 128

Query: 138 RLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGIH 197
                L+R         ++G S     ++++I + A S+A V I GESG GKELVAR IH
Sbjct: 129 TPGTTLERS--------LLGDSPPMLSVRKQIEKLARSQAPVYISGESGCGKELVARLIH 180

Query: 198 EASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEIG 256
           E   R   PFVP+NCGAI  EL+ESE FGH  G+F+GA + + GLF+ A+GGTLFLDE+ 
Sbjct: 181 EQGPRANLPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA 240

Query: 257 EMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRLN 316
           ++PL MQ  LLR ++++AVR VG ++E  VDVR++ AT+++L  EV  GRFR DLYYRLN
Sbjct: 241 DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLN 300

Query: 317 VLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELKN 376
           V+++ V PLRER++D+  L     + L A  G P  K   + + +++ Y +PGN+REL+N
Sbjct: 301 VIELRVPPLRERREDIELLANHMLQRLAANTGSPPVKLHPQALDALRSYRFPGNVRELEN 360

Query: 377 LIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPLS 436
           ++ER   L +      +++    +        ++  N ++   DN+         D+ L 
Sbjct: 361 MLERAYTLCEQ-----QQIEADDLRLAEGNGSAEPGNPDLMQVDNL--------EDY-LE 406

Query: 437 AVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
            VE+  I Q +     N++AAA+ L ++ +++  + K+
Sbjct: 407 DVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKK 444