Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Type IV fimbriae expression regulatory protein PilR from Pseudomonas fluorescens FW300-N1B4

 Score =  277 bits (708), Expect = 6e-79
 Identities = 167/465 (35%), Positives = 261/465 (56%), Gaps = 37/465 (7%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+VDDE  ++ +L+  L +       A ++ EA+ L     +DL + D+ LP  +G+  
Sbjct: 9   ILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARETFDLCLTDMRLPDGTGLAL 68

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +       +  V  +T +  LETAI+ALK GA DF+ KP +L ++ + V   ++     
Sbjct: 69  VQHIQQRYAQVPVAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALSLPAPG 128

Query: 138 RLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGIH 197
                + R        +++G S+    L+++I + A S+A V I GESG+GKELVAR IH
Sbjct: 129 GASSVIDR--------RLLGDSLPMRSLRKQIDKLARSQAPVYISGESGSGKELVARLIH 180

Query: 198 EASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEIG 256
           +   R   PFVP+NCGAI  EL+ESE FGH  G+F+GA + + GLF+ A+GGTLFLDE+ 
Sbjct: 181 DQGPRATRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA 240

Query: 257 EMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRLN 316
           ++PL MQ  LLR ++++AVR +G ++E  VDVR++ AT+++L  EV   RFR DLYYRLN
Sbjct: 241 DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDTEVAAERFRQDLYYRLN 300

Query: 317 VLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELKN 376
           V+++ V PLRER+ D+  L     K L    G P  K   + + +++ Y +PGN+REL+N
Sbjct: 301 VIELRVPPLRERRDDIELLANNMLKRLATGTGQPAAKLHPQALDALKSYRFPGNVRELEN 360

Query: 377 LIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPN----- 431
           ++ER        AH   E               Q   S++ L +    P  G P+     
Sbjct: 361 MLER--------AHTLCE-------------NKQIEASDLRLAEGNCNPDGGVPDLTQID 399

Query: 432 --DWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
             +  L  VE+  I Q +     N++AAA+ L ++ +++  + K+
Sbjct: 400 NLEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKK 444