Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  275 bits (702), Expect = 3e-78
 Identities = 175/475 (36%), Positives = 267/475 (56%), Gaps = 40/475 (8%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+V+DE  ++  L++ L +    V  A S++EA+       +DL++ D+ LPG  G E 
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYEVSEAGSVQEAQERYSIPGFDLIVSDLRLPGAPGTEL 63

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
            +          V+ MT +A L +A+ ++K+GA D+I KPF+ ++MLQ V R ++   + 
Sbjct: 64  IKLAEG----TPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQTVARILS---DH 116

Query: 138 RLQYALQRDFQRHCTTQ----------IIGSSVQTELLKQRIVQFAPSRASVLIEGESGT 187
           +   A+Q    R  +            IIG     + L  +I + AP+ ++VLI+GESGT
Sbjct: 117 QQSAAVQAQPARSASATAAGSGRDDIGIIGHCAPMQDLFGKIRKVAPTDSNVLIQGESGT 176

Query: 188 GKELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVAN 246
           GKELVAR +H  S R + P + +NC AI   L+ESELFGH  GAFTGA   R GL   A+
Sbjct: 177 GKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVEAAD 236

Query: 247 GGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGR 306
           GGTLFLDEIGE+PL  QA LLRVL++  +R VGS +   VDVR++AAT+R+L+   + G+
Sbjct: 237 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKTGQ 296

Query: 307 FRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYD 366
           FR DLYYRL+V+ +++ PLRER  D+ E+   F       +G     ++ +   +++ Y 
Sbjct: 297 FREDLYYRLHVIALKLPPLRERGSDVLEIAKAFLARQGERMGSDDLHFSRDAEQAIRHYS 356

Query: 367 WPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQP- 425
           WPGN+REL+N IER  +L + P     EL G+ I  +              L D+  +P 
Sbjct: 357 WPGNVRELENAIERAAILSESP-EIDAELLGIDIELD-------------ELDDDFDEPL 402

Query: 426 ----SLGYPNDWPLSAVEKAHIQQIVALHEGN--KSAAARDLGVARKTL-ERKYK 473
                +   N+       + + Q  V  H+ +  ++  AR LG++RK L ER+ +
Sbjct: 403 GSIRGIANSNEPTEDLSLEDYFQHFVLEHQDHMTETELARKLGISRKCLWERRQR 457