Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  288 bits (738), Expect = 2e-82
 Identities = 167/457 (36%), Positives = 263/457 (57%), Gaps = 24/457 (5%)

Query: 19  LLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEWE 78
           L++DDE  ++ +L+  L +       A +++EA  L    HYDL + D+ LP  SG+E  
Sbjct: 27  LIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSGLELV 86

Query: 79  EAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNER 138
           +       +  V  +T +  L+TAI ALK GA DF+ KP +L ++ + V   +  R    
Sbjct: 87  QYIQQQHPQLPVAMITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAT 146

Query: 139 LQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARGIHE 198
                    +    ++++G S   ++L+++I + A S+A V I GESG+GKELVAR IHE
Sbjct: 147 ---------EAPVDSRLLGGSPPMKVLRKQIGKLARSQAPVYISGESGSGKELVARLIHE 197

Query: 199 ASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDEIGE 257
              R +  FVP+NCGAI  EL+ESE FGH  G+F+GA + + GLF+ A+GGTLFLDE+ +
Sbjct: 198 QGPRAEKTFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAASGGTLFLDEVAD 257

Query: 258 MPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYRLNV 317
           +PL MQ  LLR ++++AVR VG  +EV VDVR++ AT+++L  EV  GRFR DLYYRLNV
Sbjct: 258 LPLPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLAAEVAAGRFRQDLYYRLNV 317

Query: 318 LKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRELKNL 377
           +++ V PLRER++D+  L     + L  E G  +     E ++ ++ Y +PGN+REL+N+
Sbjct: 318 IELRVPPLRERREDIRLLADAMLRRLAQECGDSIAHLHPEALAKLESYRFPGNVRELENM 377

Query: 378 IERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDWPLSA 437
           +ER   L         E+    +        S++  + ++  DN+            L  
Sbjct: 378 LERAYTLCD-----GEEIKAGDLRLADSPGSSENGEASLAQIDNLED---------HLEE 423

Query: 438 VEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
           +E+  I Q +     N++AAA+ LG+  +++  + K+
Sbjct: 424 IERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKK 460