Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  265 bits (676), Expect = 3e-75
 Identities = 170/467 (36%), Positives = 253/467 (54%), Gaps = 42/467 (8%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           VLL+DD+  ++  L + L     +V       E           +++ DI +PG  G+E 
Sbjct: 13  VLLIDDDPHLRQALSQTLDLAGLKVASLGDARELAARLPADWPGVVVSDIRMPGIDGLEL 72

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRL-- 135
            +     D    VI +TG  D++ A+ A++ GA DF+ KPF  E +L +V+R +  R   
Sbjct: 73  LQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALRQLV 132

Query: 136 --NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
             N  L+ AL    ++  + +++G S     L+++I   A ++A VLI GE+G GKE+VA
Sbjct: 133 LDNRSLRLALAD--RQQLSARLLGQSKAMLRLREQIGALAGTQADVLILGETGAGKEVVA 190

Query: 194 RGIHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
           R +H+ S R+ GPFV IN GA+A  ++ESELFGH  GAFTGA+K R G F  ANGGTLFL
Sbjct: 191 RALHDLSNRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFL 250

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DEI  M L +Q  LLR+L++R V  +G  + + +D+RV+AAT  +L+   + GRFR DLY
Sbjct: 251 DEIESMSLDVQVKLLRLLQERVVERLGGNQSIALDIRVIAATKEDLRVAADQGRFRADLY 310

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           YRLNV  + + PLRER +D+  L   F +      G+P+ +   E  +++  + WPGN+R
Sbjct: 311 YRLNVAPLGIPPLRERNEDILLLFQHFAEAGAQRHGLPIRELQPEQRAALLRHAWPGNVR 370

Query: 373 ELKNLIERCLL-----LGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSL 427
           EL+N  ER  L     L +P              AEP  +++ + N    L + V     
Sbjct: 371 ELQNTAERFALGLGLGLDQPG-------------AEPTSSVAGTGN----LSEQV----- 408

Query: 428 GYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKE 474
                    A E+A I   +    G+  + A  LGV RKTL  K ++
Sbjct: 409 --------EAFERALIAAELNRPHGSLRSVAEALGVPRKTLHDKLRK 447