Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  278 bits (712), Expect = 2e-79
 Identities = 180/464 (38%), Positives = 265/464 (57%), Gaps = 17/464 (3%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           VLLV+D+  ++ +L + L     +V   +S EEA          L++ D+ LPG  G+  
Sbjct: 9   VLLVEDDDSLRQLLVEELEDRGLQVRALASAEEAVGSLESWEPALVVSDLRLPGADGMAL 68

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLNE 137
                        + +T F  ++ A++ALK GA +F+ KP +LE    AV R +  R   
Sbjct: 69  LRRVKSMQAAPAFLVITAFGSIQQAVAALKEGADEFLTKPLDLEHFGLAVARALETR--- 125

Query: 138 RLQYALQRDFQRHCTTQ----IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVA 193
           RL+  ++R FQ+  +      ++G S     L  +I Q A +   VL+ GESGTGKELVA
Sbjct: 126 RLRDEVRR-FQQLLSDDRFHGMLGRSRVMRGLFDQIRQLARAEGPVLVIGESGTGKELVA 184

Query: 194 RGIHEASGRQG-PFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFL 252
           R +H  S R   PF+ INC  +  ELLESE FGH +GAFTGA ++ +GLF+ A+GGTLFL
Sbjct: 185 RAVHAESERANRPFLAINCAGLPAELLESEFFGHVAGAFTGANRAHKGLFQQADGGTLFL 244

Query: 253 DEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLY 312
           DEIGEMPL +QA LLRVL++  +RPVG+E+E+ VDVR++AA+NR L+ E     FR DL+
Sbjct: 245 DEIGEMPLPLQAKLLRVLQEGTIRPVGAERELTVDVRIIAASNRPLETEAGREAFREDLF 304

Query: 313 YRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIR 372
           +RL    ++V PLR+R++DL  L   F     A  G P+   A   ++ ++ Y +PGN+R
Sbjct: 305 FRLETFILQVPPLRDREEDLELLAAGFVAHFAARSGRPVRGLAPAVLAQLRRYPFPGNVR 364

Query: 373 ELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPND 432
           EL+N IER +      +    EL  LP      +   + +N+  +  + + Q S G P  
Sbjct: 365 ELQNAIERAVTFCHGRS---IELEHLP----SRIADYRDDNARSAGAELLAQLSDG-PLL 416

Query: 433 WPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEWE 476
             L  +E  +I+ ++ L +GNK  AA  LG+ R+TL R+  E E
Sbjct: 417 PTLEELELRYIEHVLKLVDGNKRRAAALLGIGRRTLYRRLGERE 460