Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  271 bits (692), Expect = 4e-77
 Identities = 169/462 (36%), Positives = 262/462 (56%), Gaps = 32/462 (6%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           +VL+V+D+  + L  ++AL+      +  SS EEA     ++   ++I DI LPG  G+E
Sbjct: 8   TVLIVEDDPHVLLGCQQALALEDIASEGVSSAEEALKRIDDNFAGIVISDIRLPGIDGLE 67

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
                   D    V+ +TG  D+  A++A++ GA DF+ KPF+ E+++   +R + +R  
Sbjct: 68  LLSRLKARDSSLPVVLITGHGDITMAVNAMRDGAYDFMEKPFSPERLVDVTRRALEQRGL 127

Query: 137 ERLQYALQRDFQRHCTTQ--IIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVAR 194
            R  +AL++      + +  IIG S   + L+  I   A + A+VLIEGE+GTGKELVAR
Sbjct: 128 AREVWALRKQLAERDSLEGRIIGRSPAMQNLRALIANVADTSANVLIEGETGTGKELVAR 187

Query: 195 GIHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
            +H+ S R+   FV +NCG +A  L ESE+FGH + AFTGA K R G    A+ GTLFLD
Sbjct: 188 CLHDFSRRKDSQFVALNCGGLAESLFESEIFGHEANAFTGAGKRRIGKIEHAHNGTLFLD 247

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           E+  MP+ +Q  LLRVL++R +  +GS + V VD RV+AAT  +L    +  +FR DLYY
Sbjct: 248 EVESMPVNLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLNALGKTNQFRSDLYY 307

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLNV+ +E+ PLRER++D+ +L   F ++         P    +  S++  +DWPGN+RE
Sbjct: 308 RLNVVTLELPPLRERREDILQLFEHFLQLSSLRFDREPPVLDRQTSSNLMSHDWPGNVRE 367

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           L+N+ ER  L             GLP + +   T+S++              SLG+    
Sbjct: 368 LRNVAERFAL-------------GLPAFKQ-SGTVSENQ-------------SLGFAE-- 398

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
            + A E++ +   +    GN S A+++LG+A+ TL  K K++
Sbjct: 399 AVEAFERSLLGDALQRSGGNLSQASQELGMAKTTLFDKVKKY 440