Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., Two-component response regulator CbrB from Pseudomonas syringae pv. syringae B728a

 Score =  279 bits (714), Expect = 1e-79
 Identities = 179/473 (37%), Positives = 270/473 (57%), Gaps = 29/473 (6%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +L+V+DE  ++  L++ L +    V  A S++EA+       +DL++ D+ LPG  G E 
Sbjct: 21  ILIVEDETIIRSALRRLLERNQYEVSEAGSVQEAQERFSIPSFDLIVSDLRLPGAPGTEL 80

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKR--- 134
            +          V+ MT +A L +A+ ++K+GA D+I KPF+ ++MLQAV R +  R   
Sbjct: 81  IKL----GEGKPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVSRILRDRQTV 136

Query: 135 --------LNERLQYALQRDFQRHC-TTQIIGSSVQTELLKQRIVQFAPSRASVLIEGES 185
                      R   A +   Q H     IIGS      L  +I + AP+ ++VLI+GES
Sbjct: 137 KHLQDERGATARTSSAEKGPAQNHNGEIGIIGSCPPMLDLYSKIRKVAPTDSNVLIQGES 196

Query: 186 GTGKELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRV 244
           GTGKELVAR +H  S R + P + +NC AI   L+ESELFGH  GAFTGA   R GL   
Sbjct: 197 GTGKELVARALHNLSRRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEA 256

Query: 245 ANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVEN 304
           A+GGTLFLDEIGE+PL  QA LLRVL++  +R VGS +   VDVR++AAT+R+L+   +N
Sbjct: 257 ADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKN 316

Query: 305 GRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQD 364
           G FR DL+YRL+V+ +++  LRER  D+ E+   F      ++G    K+A++   +++ 
Sbjct: 317 GEFREDLFYRLHVIALKLPALRERGNDILEIAHAFLVRQSGKVGRDDLKFAHDAEQAIRH 376

Query: 365 YDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQ 424
           Y WPGN+REL+N +ER ++L + P     +L G+ I  +         + +  +G     
Sbjct: 377 YSWPGNVRELENAVERSVILCENP-EITADLLGIDIELD-------GLDDDEYMGMAPLP 428

Query: 425 PSLGYPNDWPLSAVE-KAHIQQIVALHEGN--KSAAARDLGVARKTL-ERKYK 473
            S G   + P   +  + + Q  V  H+ +  ++  AR LGV+RK L ER+ +
Sbjct: 429 GSSGSSGNEPAEDLSLEDYFQHFVLEHQDHMTETELARKLGVSRKCLWERRQR 481